[Home] | [Total List]

[182448_at]

Description F48B9.2 /REP_DB=WormBase Gene ID /WP=CE04610 /TR=Q20556 /GB=AAA81752.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 17      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 6.2
(-2.6)
A 		6.3
(-2.6)
A 		3.4
(-3)
A 		48.2
(3)
A 		45
B 5.6
(-3)
A 		37.8
(3)
A 		10.6
(-2.1)
A 		17.7
(-0.7)
A 		32
C 0.8
(-3)
A 		6.2
(-1.9)
A 		21.3
(1)
A 		31.2
(3)
A 		30
avr 4.2
(-3) 		16.8
(-0.3) 		11.8
(-1.4) 		32.4
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 3.4
(-3)
A 		6.1
(-2.1)
A 		4
(-2.8)
A 		21.6
(3)
A 		9
(-1.2)
A 		4.9
(-2.5)
A 		18
B 2.7
(-3)
A 		9.7
(-1.4)
A 		4.9
(-2.5)
A 		29.5
(3)
A 		25.6
(2.1)
A 		4.1
(-2.7)
A 		27
C 1.7
(-3)
A 		6.2
(-1.4)
A 		8.2
(-0.7)
A 		16.6
(2.2)
A 		19
(3)
A 		2
(-2.9)
A 		17
avr 2.6
(-3) 		7.3
(-1.6) 		5.7
(-2.1) 		22.6
(3) 		17.9
(1.6) 		3.7
(-2.7) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.3
(-1.6)
A 		1.4
(-2.5)
A 		0.9
(-3)
A 		7.1
(3)
A 		6
B 1.8
(-3)
A 		9.3
(3)
A 		2.5
(-2.4)
A 		3.8
(-1.4)
A 		8
C 0.3
(-3)
A 		1.8
(-1.7)
A 		7.4
(3)
A 		5.3
(1.2)
A 		7
avr 1.5
(-3) 		4.2
(1.2) 		3.6
(0.2) 		5.4
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.2
(-1)
A 		0.9
(-2.6)
A 		5.5
(3)
A 		2.7
(-0.4)
A 		1.2
(-2.3)
A 		5
B 0.9
(-3)
A 		3.2
(-1.5)
A 		1.2
(-2.8)
A 		7.8
(1.4)
A 		10.4
(3)
A 		1.5
(-2.6)
A 		10
C 0.6
(-3)
A 		1.9
(-1.6)
A 		2.1
(-1.4)
A 		3.3
(-0.1)
A 		6.2
(3)
A 		0.7
(-2.9)
A 		6
avr 0.7
(-3) 		2.4
(-1.2) 		1.4
(-2.3) 		5.5
(2.1) 		6.4
(3) 		1.1
(-2.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182448_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18391
Sequence Type Exemplar sequence
Representative Public ID F48B9.2 NCBI
Target Description F48B9.2 /REP_DB=WormBase Gene ID /WP=CE04610 /TR=Q20556 /GB=AAA81752.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076000(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076000 NCBI Caenorhabditis elegans F48B9.2 (F48B9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000005472 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2165103:2173830:1 11/11 None
SNAP00000005469 ENSEMBL cdna:SNAP chromosome:CEL140:X:2172850:2173830:1 11/11 None
F48B9.2 ENSEMBL cdna:known chromosome:CEL140:X:2172850:2173830:1 gene:F48B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2172849-2173830(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48B9.2
Entrez Gene 185964 Entrez gene
SwissProt Q20556 EMBL-EBI
WormBase CE04610 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA81752 Hypothetical protein F48B9.2 [Caenorhabditis elegans] ref|NP_508401.1| F48B9.2 [Caenorhabditis elegans] 1.0E-146
blast AAA81749 Hypothetical protein F48B9.3 [Caenorhabditis elegans] ref|NP_508398.1| F48B9.3 [Caenorhabditis elegans] 2.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508401.1 1 257-279
F48B9.2 1 257-279
GENEFINDER00000005472 2 7-29,426-448
SNAP00000005469 1 257-279
Sequence
Target Sequence 
>C. ELEGANS:182448_AT
taattcatgtaaactttccaaccgccgacgagtcgaccattggtgagcctgcttttatgt
cgagtaacacattcttggaatccgaagtgattgatgttggagaattggaaattcgggaaa
tggaagtggaaatcgaggaaatcatggatgaagaaactgacgaaaaaactaacgaaatcg
atttgaacacctattttgaacaggacgaagcttcagattcagaaccaaaaaccgaaatgg
agactcaagtggaatcaagcggagaaaaaattattatcctcttcgaatcagaggaatctc
aagacgaatcagattatgaaccctttgtgatatctgctgtgccagaagattcgactattg
tgcgagcagagccattctccgctgtgatcataccactccccgagcacacaatcgaatcta
gcatcaatcaagaattttcgacgccagaggagcttttgatagcttttcttatcatgttat
cccttacattttttgttctgatgtgcgtctatggttttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTCATGTAAACTTTCCAACCGC 697 633 329 Antisense
GCCGACGAGTCGACCATTGGTGAGC 98 285 352 Antisense
GTGAGCCTGCTTTTATGTCGAGTAA 601 483 371 Antisense
GGACGAAGCTTCAGATTCAGAACCA 432 523 531 Antisense
GAACCCTTTGTGATATCTGCTGTGC 335 347 646 Antisense
TATTGTGCGAGCAGAGCCATTCTCC 458 663 684 Antisense
GAGCACACAATCGAATCTAGCATCA 48 391 730 Antisense
GAATTTTCGACGCCAGAGGAGCTTT 367 323 760 Antisense
AGCTTTTCTTATCATGTTATCCCTT 319 77 789 Antisense
GTTATCCCTTACATTTTTTGTTCTG 164 445 804 Antisense
GTTCTGATGTGCGTCTATGGTTTTG 391 443 823 Antisense
Sequence Source Affymetrix Proprietary Database