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[182447_at]

Description T10B10.3 /REP_DB=WormBase Gene ID /WP=CE06401 /TR=Q22368 /GB=CAA96673.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 38      4grp_highest_8_8 > 58      4grp_high_8_8 > 34      6grp_highest_nonorm > 80      6grp_total > 37      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 253.3
(3)
P 		218
(-0.9)
P 		199.5
(-3)
P 		219.5
(-0.8)
P 		54
B 281.6
(3)
P 		225.1
(-0)
P 		222.8
(-0.1)
P 		169.5
(-3)
P 		112
C 253.1
(2.9)
P 		239.3
(1.6)
P 		189.7
(-3)
P 		254.3
(3)
P 		65
avr 262.7
(3) 		227.5
(-0.6) 		204
(-3) 		214.4
(-1.9) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 227.8
(-0.3)
P 		268.7
(1.2)
P 		150.4
(-3)
P 		204
(-1.1)
P 		167.9
(-2.4)
P 		320.1
(3)
P 		170
B 221.3
(1.8)
P 		237.4
(3)
P 		154.7
(-3)
P 		191.7
(-0.3)
P 		157
(-2.8)
P 		188.4
(-0.6)
P 		83
C 296.2
(3)
P 		197.5
(-2.7)
P 		227.7
(-0.9)
P 		228.7
(-0.9)
P 		247.6
(0.2)
P 		191.7
(-3)
P 		105
avr 248.4
(3) 		234.5
(1.8) 		177.6
(-3) 		208.1
(-0.4) 		190.8
(-1.9) 		233.4
(1.7) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 92.2
(3)
P 		47.3
(-1.5)
P 		52.2
(-1)
P 		32.1
(-3)
P 		60
B 89.8
(3)
P 		55.6
(-0.8)
P 		51.6
(-1.3)
P 		36.1
(-3)
P 		54
C 83.8
(3)
P 		68.8
(0.8)
P 		66.1
(0.4)
P 		42.9
(-3)
P 		41
avr 88.6
(3) 		57.2
(-0.7) 		56.6
(-0.7) 		37
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 42
(-2.1)
P 		95.6
(3)
P 		32.7
(-3)
P 		51.7
(-1.2)
P 		50.7
(-1.3)
P 		77.9
(1.3)
P 		63
B 77
(2.7)
P 		79
(3)
P 		37.6
(-3)
P 		50.8
(-1.1)
P 		63.8
(0.8)
P 		70.2
(1.7)
P 		41
C 109.8
(3)
P 		60.3
(-1.7)
P 		58
(-1.9)
P 		46
(-3)
P 		80.1
(0.2)
P 		64.2
(-1.3)
P 		64
avr 76.3
(2.7) 		78.3
(3) 		42.8
(-3) 		49.5
(-1.9) 		64.9
(0.7) 		70.8
(1.7) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182447_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17808
Sequence Type Exemplar sequence
Representative Public ID T10B10.3 NCBI
Target Description T10B10.3 /REP_DB=WormBase Gene ID /WP=CE06401 /TR=Q22368 /GB=CAA96673.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078122(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078122 NCBI Caenorhabditis elegans T10B10.3 (T10B10.3) mRNA, complete cds. 11/11 None
SNAP00000009613 ENSEMBL cdna:SNAP chromosome:CEL140:X:15178583:15181371:-1 11/11 None
GENEFINDER00000009622 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15178583:15181371:-1 11/11 None
T10B10.3.2 ENSEMBL cdna:known chromosome:CEL140:X:15177970:15181381:-1 gene:T10B10.3 11/11 None
T10B10.3.1 ENSEMBL cdna:known chromosome:CEL140:X:15177970:15181383:-1 gene:T10B10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15178582-15181371(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10B10.3
Entrez Gene 181612 Entrez gene
SwissProt Q22368 EMBL-EBI
WormBase CE06401 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96673 Hypothetical protein T10B10.3 [Caenorhabditis elegans] ref|NP_510523.1| T10B10.3 [Caenorhabditis elegans] 0.0
blast CAE63246 Hypothetical protein CBG07612 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001849 EMBL-EBI Pleckstrin-like 1.2E-7
Sequence
Target Sequence 
>C. ELEGANS:182447_AT
ttttaatgtgtttgccgactcgacctgcaagaccgaagaattggtgattagcttaagtgg
ctccagtatcaatagcacaggaagagttgctttccaaatgaaagctgcagaaggtacatt
tgagtttgagtgcccaacccaggaggatcaaatcgaatggaccagaatcctgacaatgat
tgcggagaataagacgacgcagccatacatggcatcttgccttgcagtagtcacggagac
ctgcatcgcactggttcaagagggcgaaaagttctggtccgatggattcttgcgccttct
caacgaagttggaggtattaacgtcaagcaatcggtagttgttcgtcagccggaggataa
ggagagcttctttgggaatcgctcgcctgcgctttgcttggtcaccaaagacgataccat
tcattacttcttcgtccgattcgataaggagctggaacggcttgcgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTAATGTGTTTGCCGACTCGACC 36 677 1650 Antisense
AGTGCCCAACCCAGGAGGATCAAAT 388 59 1778 Antisense
ATAAGACGACGCAGCCATACATGGC 387 25 1838 Antisense
TGGCATCTTGCCTTGCAGTAGTCAC 143 547 1859 Antisense
CAGTAGTCACGGAGACCTGCATCGC 553 207 1874 Antisense
GTTCTGGTCCGATGGATTCTTGCGC 450 443 1920 Antisense
ATTCTTGCGCCTTCTCAACGAAGTT 520 11 1935 Antisense
GTAGTTGTTCGTCAGCCGGAGGATA 627 455 1984 Antisense
AGAGCTTCTTTGGGAATCGCTCGCC 56 71 2012 Antisense
TTCATTACTTCTTCGTCCGATTCGA 651 685 2069 Antisense
TAAGGAGCTGGAACGGCTTGCGTCT 592 635 2094 Antisense
Sequence Source Affymetrix Proprietary Database