[Home] | [Total List]

[182445_at]

Description F25F1.1 /REP_DB=WormBase Gene ID /WP=CE17700 /TR=O61713 /GB=AAC16424.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 46      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 143.7
(3)
A 		59.6
(-2.8)
A 		84.6
(-1.1)
A 		56.8
(-3)
A 		87
B 111.9
(-3)
A 		149.2
(3)
A 		113
(-2.8)
A 		124.8
(-0.9)
A 		37
C 149.8
(3)
A 		125.1
(-0.5)
A 		107.1
(-3)
A 		127.1
(-0.2)
A 		43
avr 135.1
(3) 		111.3
(-1.3) 		101.6
(-3) 		102.9
(-2.8) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 84.1
(-0.9)
A 		206.4
(3)
A 		25.4
(-2.8)
A 		71.9
(-1.3)
A 		20.3
(-3)
A 		21.8
(-3)
A 		186
B 47.4
(-0.6)
A 		86.2
(3)
A 		80.9
(2.5)
A 		25.4
(-2.6)
A 		21.6
(-3)
A 		46.5
(-0.7)
A 		65
C 89.3
(2.1)
A 		89.5
(2.1)
A 		104.9
(3)
A 		19.9
(-2.1)
A 		68.4
(0.8)
A 		5.1
(-3)
A 		100
avr 73.6
(-0.1) 		127.4
(3) 		70.4
(-0.3) 		39.1
(-2.1) 		36.8
(-2.3) 		24.5
(-3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 52.3
(3)
A 		12.9
(-2.4)
A 		22.1
(-1.1)
A 		8.3
(-3)
A 		44
B 35.7
(2.3)
A 		36.9
(3)
A 		26.2
(-3)
A 		26.6
(-2.8)
A 		11
C 49.6
(3)
A 		36
(0.1)
A 		37.3
(0.4)
A 		21.4
(-3)
A 		28
avr 45.9
(3) 		28.6
(-0.8) 		28.5
(-0.9) 		18.8
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 15.5
(-2.1)
A 		73.4
(3)
A 		5.5
(-3)
A 		18.2
(-1.9)
A 		6.1
(-2.9)
A 		5.3
(-3)
A 		68
B 16.5
(-0.3)
A 		28.7
(3)
A 		19.6
(0.5)
A 		6.7
(-3)
A 		8.8
(-2.4)
A 		17.3
(-0.1)
A 		22
C 33.1
(3)
A 		27.3
(1.9)
A 		26.7
(1.8)
A 		4
(-2.6)
A 		22.1
(0.9)
A 		1.7
(-3)
A 		31
avr 21.7
(-0.7) 		43.1
(3) 		17.3
(-1.4) 		9.6
(-2.7) 		12.3
(-2.3) 		8.1
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182445_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.202
Sequence Type Exemplar sequence
Representative Public ID F25F1.1 NCBI
Target Description F25F1.1 /REP_DB=WormBase Gene ID /WP=CE17700 /TR=O61713 /GB=AAC16424.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026367 NCBI Caenorhabditis elegans K03E5.5a (K03E5.5) mRNA, complete cds. 11/11 None
K03E5.5a ENSEMBL cdna:known chromosome:CEL140:I:3375100:3402865:-1 gene:K03E5.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026368 1/11 Cross Hyb Matching Probes None
K03E5.5b 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
184929 2 1 NM_001026367 182445_at (11), 184186_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3385732-3389039(-) 100.0 100.0
Public Domain and Genome References
Ensembl K03E5.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021538 K03E5.5a [Caenorhabditis elegans] 0.0
blast NP_001021539 K03E5.5b [Caenorhabditis elegans] 0.0
blast T33824 hypothetical protein W05F2.4 - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:182445_AT
gcatccgacactcgagcatcgattattcttgatgaaatgcgtggaaccgaggcggctgtg
gaatggacacgtgatttggatattgatgatgagcttgatcattataatggaattcttgta
cttccggataaatcgattctcgaacaatacatctcacggaaacataattgtgcatcacca
tgcccatcaactgtctcggaactttgtcttccatcttccgtattggtgcacgagccccgc
cggcgtgctcaatacagtgcggagcccactgaccattgcatcaccccagtcccattgaac
tcaacgccacgtggatttacaacaaagaaagaacctccaccggtgattaaacctgtacca
ttcgaggcacccaagacactcttcgaaaagatgattcaagatcaggcaaatcgtaatcgg
acggttactacttcagaggtgagggttttgttgaatagttttgttggacagagccctgga
gccggctcatacactgctctctctctttcccgcttggaggacaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCCGACACTCGAGCATCGATTA 552 307 43 Antisense
GAAATGCGTGGAACCGAGGCGGCTG 309 361 76 Antisense
CATAATTGTGCATCACCATGCCCAT 2 215 205 Antisense
CTGTCTCGGAACTTTGTCTTCCATC 606 239 233 Antisense
TCTTCCATCTTCCGTATTGGTGCAC 104 619 249 Antisense
CGCCGGCGTGCTCAATACAGTGCGG 695 255 280 Antisense
ATACAGTGCGGAGCCCACTGACCAT 503 23 294 Antisense
GAACCTCCACCGGTGATTAAACCTG 534 343 373 Antisense
TAAACCTGTACCATTCGAGGCACCC 352 635 390 Antisense
ATCGGACGGTTACTACTTCAGAGGT 612 31 458 Antisense
TCTCTTTCCCGCTTGGAGGACAAGT 544 611 544 Antisense
Sequence Source Affymetrix Proprietary Database