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[182443_at]

Description F29B9.8 /REP_DB=WormBase Gene ID /WP=CE09786 /TR=Q9GYI7 /GB=AAF99923.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 74      6grp_total > 92      4grp_total > 59      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 986
1 2 3 4 range
A 697
(0.6)
P 		921.7
(2.8)
P 		943.8
(3)
P 		338
(-3)
P 		606
B 757.7
(1.1)
P 		847.1
(2)
P 		939.4
(3)
P 		369
(-3)
P 		570
C 688.4
(-0.1)
P 		1203.2
(3)
P 		924.1
(1.3)
P 		216.9
(-3)
P 		986
avr 714.4
(0.6) 		990.7
(3) 		935.8
(2.5) 		308
(-3) 		683

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 380
1 2 3 4 5 6 range
A 664.7
(-0.3)
P 		750.2
(1.3)
P 		678.7
(-0.1)
P 		530.1
(-3)
P 		833.9
(3)
P 		543.9
(-2.7)
P 		304
B 536.4
(-2)
P 		844.4
(3)
P 		526.6
(-2.2)
P 		697.2
(0.6)
P 		791.4
(2.1)
P 		476.6
(-3)
P 		368
C 656.2
(0.3)
P 		811.7
(3)
P 		573.3
(-1.1)
P 		671.9
(0.6)
P 		746.5
(1.9)
P 		464.2
(-3)
P 		348
avr 619.1
(-0.6) 		802.1
(3) 		592.9
(-1.1) 		633.1
(-0.3) 		790.6
(2.8) 		494.9
(-3) 		307
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 253.8
(3)
P 		200.1
(1.4)
P 		246.7
(2.8)
P 		49.5
(-3)
P 		204
B 241.6
(3)
P 		209.2
(1.8)
P 		217.7
(2.1)
P 		78.6
(-3)
P 		163
C 227.9
(0.7)
P 		345.9
(3)
P 		322.1
(2.5)
P 		36.6
(-3)
P 		309
avr 241.1
(2.4) 		251.7
(2.7) 		262.2
(3) 		54.9
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 122.5
(-3)
P 		266.8
(3)
P 		147.8
(-1.9)
P 		134.5
(-2.5)
P 		251.6
(2.4)
P 		132.4
(-2.6)
P 		144
B 186.6
(-1.2)
P 		281.1
(1.7)
P 		127.9
(-3)
P 		184.7
(-1.2)
P 		321.5
(3)
P 		177.7
(-1.5)
P 		194
C 243.2
(2.8)
P 		247.7
(3)
P 		145.9
(-2.4)
P 		135.1
(-3)
P 		241.6
(2.7)
P 		155.4
(-1.9)
P 		113
avr 184.1
(-1) 		265.2
(2.7) 		140.5
(-3) 		151.4
(-2.5) 		271.6
(3) 		155.2
(-2.3) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182443_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10755
Sequence Type Exemplar sequence
Representative Public ID F29B9.8 NCBI
Target Description F29B9.8 /REP_DB=WormBase Gene ID /WP=CE09786 /TR=Q9GYI7 /GB=AAF99923.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068201(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068201 NCBI Caenorhabditis elegans F29B9.8 (F29B9.8) mRNA, complete cds. 11/11 None
SNAP00000034761 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4647677:4649487:1 11/11 None
GENEFINDER00000034773 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4647677:4649487:1 11/11 None
F29B9.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:4647193:4649727:1 gene:F29B9.8 11/11 None
F29B9.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:4647676:4649727:1 gene:F29B9.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4647682-4649493(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F29B9.8
Entrez Gene 177227 Entrez gene
SwissProt Q9GYI7 EMBL-EBI
WormBase CE09786 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500602 F29B9.8 [Caenorhabditis elegans] gb|AAF99923.1| Hypothetical protein F29B9.8 [Caenorhabditis elegans] 0.0
blast CAE58556 Hypothetical protein CBG01718 [Caenorhabditis briggsae] 1.0E-150
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500602.1 7 62-84,91-110,171-193,214-233,248-270,291-313,341-363
F29B9.8.2 7 62-84,91-110,171-193,214-233,248-270,291-313,341-363
F29B9.8.1 7 62-84,91-110,171-193,214-233,248-270,291-313,341-363
SNAP00000034761 7 62-84,91-110,171-193,214-233,248-270,291-313,341-363
GENEFINDER00000034773 7 62-84,91-110,171-193,214-233,248-270,291-313,341-363
Sequence
Target Sequence 
>C. ELEGANS:182443_AT
gtcgccggtgattttatcttctggagtctgctcttttcgacttacacggtctttttcttc
gctcacaaggcgattgcacgtccagagcagatcacttacgagccgattggcagtgtcttc
ttcaaggctcaaatcactccggtaatctttaccgcctttgacactctcatctcgatctac
caaattccacaatgggcttatctcagcatcatttccagcatcagactcactgcgtgtatt
gtctccttcggcatcgtcacccagatgttcgctagtctcttcttattctgcagaagaaag
gacgaggtgacgaagacttctccatatgagcacgtgagaaacagcaaactccgtttgttc
ttgttcctattattcagtatctgtgttcatgtgcttacggctccttatctcatctggtcc
ggattgaccatcgcttttgacgtcggtcagcttctcggcttcaactggtacctcccaatg
cactttgcttccgagatgttcccacttcatctgaccttcttcttgctcagaccctttatc
ttcctaattctggctctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCGCCGGTGATTTTATCTTCTGGA 683 473 535 Antisense
TCTTCTGGAGTCTGCTCTTTTCGAC 602 617 551 Antisense
CTCACAAGGCGATTGCACGTCCAGA 572 227 596 Antisense
GATTGGCAGTGTCTTCTTCAAGGCT 594 435 639 Antisense
CTCATCTCGATCTACCAAATTCCAC 55 229 700 Antisense
GGCTTATCTCAGCATCATTTCCAGC 10 537 729 Antisense
TTCCAGCATCAGACTCACTGCGTGT 32 701 747 Antisense
TATCTGTGTTCATGTGCTTACGGCT 522 659 912 Antisense
GTCCGGATTGACCATCGCTTTTGAC 539 475 951 Antisense
AATGCACTTTGCTTCCGAGATGTTC 642 165 1011 Antisense
TTATCTTCCTAATTCTGGCTCTGAT 147 673 1070 Antisense
Sequence Source Affymetrix Proprietary Database