[Home] | [Total List]

[182442_at]

Description C31E10.1 /REP_DB=WormBase Gene ID /WP=CE08501 /TR=Q93310 /GB=CAB01727.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 10      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 27.7
(-1.9)
A 		19.6
(-2.3)
A 		6.1
(-3)
A 		123.5
(3)
P 		117
B 5.4
(-3)
A 		48.5
(0)
A 		6.3
(-2.9)
A 		90.3
(3)
P 		85
C 22.4
(-1.5)
A 		6.9
(-3)
A 		32.7
(-0.5)
A 		69.1
(3)
P 		62
avr 18.5
(-2.7) 		25
(-2.2) 		15
(-3) 		94.3
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 8.6
(-2.3)
A 		3.3
(-3)
A 		51
(3)
A 		12.6
(-1.8)
A 		34.9
(1)
A 		27.7
(0.1)
A 		48
B 37.7
(2.7)
A 		19.4
(-0.8)
A 		8.1
(-3)
A 		26.3
(0.5)
A 		11.2
(-2.4)
A 		39
(3)
A 		31
C 7.4
(-3)
A 		83.9
(3)
A 		19.6
(-2)
A 		48.6
(0.2)
A 		18.7
(-2.1)
A 		7.7
(-3)
A 		77
avr 17.9
(-3) 		35.5
(3) 		26.2
(-0.2) 		29.2
(0.9) 		21.6
(-1.7) 		24.8
(-0.6) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.1
(0.1)
A 		4.2
(-2.1)
A 		1.6
(-3)
A 		18.1
(3)
P 		17
B 1.7
(-2.9)
A 		12
(0.6)
A 		1.5
(-3)
A 		19.2
(3)
P 		18
C 7.4
(0.4)
A 		2
(-3)
A 		11.4
(2.9)
A 		11.6
(3)
P 		10
avr 6.4
(-2.2) 		6.1
(-2.3) 		4.8
(-3) 		16.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.6
(-2.8)
A 		1.2
(-3)
A 		11.1
(3)
A 		3.2
(-1.8)
A 		10.5
(2.6)
A 		6.7
(0.3)
A 		10
B 13.1
(2.3)
A 		6.5
(-0.8)
A 		2
(-3)
A 		7
(-0.6)
A 		4.5
(-1.8)
A 		14.5
(3)
A 		13
C 2.7
(-3)
A 		25.6
(3)
A 		5
(-2.4)
A 		9.8
(-1.1)
A 		6.1
(-2.1)
A 		2.6
(-3)
A 		23
avr 5.8
(-3) 		11.1
(3) 		6
(-2.8) 		6.7
(-2) 		7
(-1.6) 		7.9
(-0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182442_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17909
Sequence Type Exemplar sequence
Representative Public ID C31E10.1 NCBI
Target Description C31E10.1 /REP_DB=WormBase Gene ID /WP=CE08501 /TR=Q93310 /GB=CAB01727.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077929 NCBI Caenorhabditis elegans C31E10.1 (C31E10.1) mRNA, complete cds. 11/11 None
C31E10.1 ENSEMBL cdna:known chromosome:CEL140:X:13984411:13985612:-1 gene:C31E10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027034 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13984410-13985612(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31E10.1
Entrez Gene 183085 Entrez gene
SwissProt Q93310 EMBL-EBI
WormBase CE08501 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6364 rRNA processing inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01727 Hypothetical protein C31E10.1 [Caenorhabditis elegans] ref|NP_510330.1| C31E10.1 [Caenorhabditis elegans] 0.0
blast AAC48081 Seven tm receptor protein 185 [Caenorhabditis elegans] ref|NP_500561.1| Seven TM Receptor family member (str-185) [Caenorhabditis elegans] 1.0E-77
blast CAE58526 Hypothetical protein CBG01681 [Caenorhabditis briggsae] 2.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-4
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.5E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510330.1 8 12-34,49-71,92-114,134-156,184-201,214-236,265-287,297-319
C31E10.1 8 12-34,49-71,92-114,134-156,184-201,214-236,265-287,297-319
Sequence
Target Sequence 
>C. ELEGANS:182442_AT
gtggagtggcattttgtttcgatgaatattcagacgaatatttaagccaacttaacccaa
tttgtttgattttcagagatgctgttaaaaacgacctaaactttaatatttctagtttgg
ccagcatggttatatttttctacctgcctgatgaaaacggaaaacttcatcctcattgga
aaacatttttggtcatgactagtatatatactataacatttgtctctattttcagtgtaa
ttttttgcggttttaaatgctataattgcattttgcaagctatgtcaattacgacggtcc
aatcaaaaatctcgaaaagtcttcagcaccacgttaaatcaatatttcatactctcattc
caatggtattgatgtatataccgctattcttcgtgtttgctctacctctttttaatataa
attttccatatgcgagtactgctatatctgcaacaatttccatttacttagccattgatc
ctctacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAGTGGCATTTTGTTTCGATGA 638 489 467 Antisense
ATATTTCTAGTTTGGCCAGCATGGT 671 19 572 Antisense
GGTTATATTTTTCTACCTGCCTGAT 359 505 594 Antisense
AACGGAAAACTTCATCCTCATTGGA 675 141 622 Antisense
ATAACATTTGTCTCTATTTTCAGTG 376 23 679 Antisense
AAAGTCTTCAGCACCACGTTAAATC 500 121 782 Antisense
TATTTCATACTCTCATTCCAATGGT 548 661 809 Antisense
TATACCGCTATTCTTCGTGTTTGCT 557 659 843 Antisense
GTTTGCTCTACCTCTTTTTAATATA 487 451 861 Antisense
ATGCGAGTACTGCTATATCTGCAAC 617 41 896 Antisense
TTACTTAGCCATTGATCCTCTACCA 497 677 930 Antisense
Sequence Source Affymetrix Proprietary Database