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[182441_s_at]

Description H12D21.2 /REP_DB=WormBase Gene ID /WP=CE19916 /TR=Q9U3D8 /GB=CAB63209.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 14      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 122.6
(0.1)
A 		104.7
(-0.8)
A 		62.7
(-3)
A 		178.1
(3)
A 		115
B 169.7
(3)
M 		26.4
(-3)
A 		60.8
(-1.6)
A 		124.3
(1.1)
M 		143
C 179.8
(0.7)
P 		11.3
(-3)
A 		28.7
(-2.6)
A 		282.2
(3)
P 		271
avr 157.4
(1.5) 		47.5
(-3) 		50.7
(-2.9) 		194.9
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 36
(-3)
A 		83.4
(2.6)
A 		83.9
(2.7)
A 		61.1
(-0)
A 		86.8
(3)
A 		84.3
(2.7)
A 		51
B 40
(-3)
A 		76
(0.6)
A 		54.8
(-1.5)
A 		68
(-0.2)
A 		99.8
(3)
A 		55.6
(-1.4)
A 		60
C 87.9
(0.9)
M 		97.2
(3)
A 		73.3
(-2.4)
A 		90.7
(1.5)
A 		78.9
(-1.1)
A 		70.4
(-3)
A 		27
avr 54.6
(-3) 		85.5
(2.5) 		70.7
(-0.2) 		73.3
(0.3) 		88.5
(3) 		70.1
(-0.3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 44.7
(3)
A 		22.7
(-1.7)
A 		16.4
(-3)
A 		26.1
(-0.9)
A 		28
B 54.1
(3)
M 		6.5
(-3)
A 		14.1
(-2)
A 		26.5
(-0.5)
M 		48
C 59.5
(3)
P 		3.2
(-3)
A 		10
(-2.3)
A 		47.6
(1.7)
P 		56
avr 52.8
(3) 		10.8
(-3) 		13.5
(-2.6) 		33.4
(0.2) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 6.6
(-3)
A 		29.7
(3)
A 		18.3
(0)
A 		15.5
(-0.7)
A 		26.2
(2.1)
A 		20.5
(0.6)
A 		23
B 13.9
(-2.9)
A 		25.3
(-0.4)
A 		13.3
(-3)
A 		18
(-2)
A 		40.6
(3)
A 		20.7
(-1.4)
A 		27
C 32.6
(3)
M 		29.7
(1.8)
A 		18.7
(-2.8)
A 		18.2
(-3)
A 		25.5
(0)
A 		23.6
(-0.7)
A 		14
avr 17.7
(-2.6) 		28.2
(1.9) 		16.8
(-3) 		17.2
(-2.8) 		30.8
(3) 		21.6
(-0.9) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182441_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14018
Sequence Type Exemplar sequence
Representative Public ID H12D21.2 NCBI
Target Description H12D21.2 /REP_DB=WormBase Gene ID /WP=CE19916 /TR=Q9U3D8 /GB=CAB63209.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074269(11), NM_074266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074269 NCBI Caenorhabditis elegans H12D21.2 (H12D21.2) mRNA, complete cds. 11/11 None
NM_074266 NCBI Caenorhabditis elegans ZC412.9 (ZC412.9) mRNA, complete cds. 11/11 None
GENEFINDER00000018100 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14883024:14884314:-1 11/11 None
SNAP00000026961 ENSEMBL cdna:SNAP chromosome:CEL140:V:14890274:14891066:-1 11/11 None
GENEFINDER00000026982 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14889392:14891066:-1 11/11 None
ZC412.9 ENSEMBL cdna:known chromosome:CEL140:V:14883906:14884346:-1 gene:ZC412.9 11/11 None
H12D21.2 ENSEMBL cdna:known chromosome:CEL140:V:14890274:14891066:-1 gene:H12D21.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14883653-14884698(-) 100.0 100.0
chrV:14890021-14891066(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl ZC412.9
H12D21.2
Entrez Gene 186726 Entrez gene
191164 Entrez gene
SwissProt Q9U3D8 EMBL-EBI
Q23302 EMBL-EBI
WormBase CE36698 Wormbase
CE15227 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63209 Hypothetical protein H12D21.2 [Caenorhabditis elegans] ref|NP_506670.2| H12D21.2 [Caenorhabditis elegans] 4.0E-72
blast CAB63209 Hypothetical protein H12D21.2 [Caenorhabditis elegans] ref|NP_506670.2| H12D21.2 [Caenorhabditis elegans] 7.0E-72
blast CAB01525 Hypothetical protein ZC412.9 [Caenorhabditis elegans] ref|NP_506667.1| ZC412.9 [Caenorhabditis elegans] 4.0E-45
blast CAB63209 Hypothetical protein H12D21.2 [Caenorhabditis elegans] ref|NP_506670.2| H12D21.2 [Caenorhabditis elegans] 1.0E-38
blast CAB01525 Hypothetical protein ZC412.9 [Caenorhabditis elegans] ref|NP_506667.1| ZC412.9 [Caenorhabditis elegans] 3.0E-38
blast CAB63209 Hypothetical protein H12D21.2 [Caenorhabditis elegans] ref|NP_506670.2| H12D21.2 [Caenorhabditis elegans] 3.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018100 2 132-154,158-180
GENEFINDER00000026982 3 5-27,206-228,232-254
Sequence
Target Sequence 
>C. ELEGANS:182441_S_AT
gtcagagcgatcagattcacagcacacgctcaccatcactgttccactgggaaaagcttc
aagaaacgatcaaccgccttccaatttgactgaggaagccgcgaagaaagtcgccggaac
tggaagaaatgatgggaaaaaggtgcaatttgctgagaagttggtgaacaaaacaaaatc
accatcaactggaccgtctacgtcgaagaaactacaaaaatctcagaaaactcaaaaatc
atccaaaaagtcgcagaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGAGCGATCAGATTCACAGCAC 38 467 306 Antisense
GCGATCAGATTCACAGCACACGCTC 62 291 312 Antisense
TCACCATCACTGTTCCACTGGGAAA 709 625 335 Antisense
TCAAGAAACGATCAACCGCCTTCCA 342 629 364 Antisense
CAACCGCCTTCCAATTTGACTGAGG 270 187 376 Antisense
CCAATTTGACTGAGGAAGCCGCGAA 301 277 386 Antisense
GGAAGCCGCGAAGAAAGTCGCCGGA 679 527 399 Antisense
GAAAGTCGCCGGAACTGGAAGAAAT 400 361 411 Antisense
AATCACCATCAACTGGACCGTCTAC 239 171 482 Antisense
GACCGTCTACGTCGAAGAAACTACA 587 381 497 Antisense
AAAATCATCCAAAAAGTCGCAGAAA 242 133 540 Antisense
Sequence Source Affymetrix Proprietary Database