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[182439_at]

Description Y17D7B.4 /REP_DB=WormBase Gene ID /WP=CE16593 /TR=O62404 /GB=CAA16301.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 83      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 45      6grp_total > 74      4grp_total > 03      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3029
1 2 3 4 range
A 2499
(-2.1)
P 		2382.1
(-2.3)
P 		2025
(-3)
P 		5054.3
(3)
P 		3029
B 2373.5
(-2.3)
P 		2224.5
(-2.7)
P 		2056.6
(-3)
P 		4970.6
(3)
P 		2914
C 2393.1
(-2)
P 		2172
(-2.6)
P 		2028.8
(-3)
P 		4308.7
(3)
P 		2280
avr 2421.9
(-2.2) 		2259.5
(-2.5) 		2036.8
(-3) 		4777.9
(3) 		2741

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2826
1 2 3 4 5 6 range
A 1478.3
(-3)
P 		1829.7
(-2.3)
P 		2497.7
(-0.8)
P 		4304.5
(3)
P 		2713.2
(-0.4)
P 		3253
(0.8)
P 		2826
B 1502.9
(-3)
P 		1614
(-2.6)
P 		2427.5
(0.7)
P 		3001.9
(3)
P 		2824.4
(2.3)
P 		2715.2
(1.9)
P 		1499
C 1484.1
(-3)
P 		1707.3
(-2.2)
P 		2548.6
(0.7)
P 		3214.4
(3)
P 		3200
(3)
P 		2817.9
(1.6)
P 		1730
avr 1488.4
(-3) 		1717
(-2.3) 		2491.3
(-0) 		3506.9
(3) 		2912.5
(1.2) 		2928.7
(1.3) 		2019
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 583
1 2 3 4 range
A 909.9
(3)
P 		517.1
(-3)
P 		529.4
(-2.8)
P 		739.9
(0.4)
P 		393
B 756.9
(-0.1)
P 		549.4
(-2.3)
P 		476.6
(-3)
P 		1059.2
(3)
P 		583
C 792.2
(3)
P 		624.5
(-3)
P 		707.1
(-0)
P 		726.5
(0.6)
P 		168
avr 819.7
(2.5) 		563.7
(-3) 		571
(-2.8) 		841.9
(3) 		278

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 875
1 2 3 4 5 6 range
A 272.5
(-3)
P 		650.7
(-0.2)
P 		543.9
(-1)
P 		1091.7
(3)
P 		818.7
(1)
P 		792
(0.8)
P 		819
B 522.9
(-3)
P 		537.2
(-2.9)
P 		589.5
(-2.4)
P 		795.1
(-0.4)
P 		1147.5
(3)
P 		1012.5
(1.7)
P 		625
C 550.1
(-2.7)
P 		520.9
(-3)
P 		648.7
(-1.5)
P 		646.4
(-1.5)
P 		1035.5
(3)
P 		943.3
(1.9)
P 		515
avr 448.5
(-3) 		569.6
(-1.7) 		594
(-1.4) 		844.4
(1.3) 		1000.6
(3) 		915.9
(2.1) 		552
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182439_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14011
Sequence Type Exemplar sequence
Representative Public ID Y17D7B.4 NCBI
Target Description Y17D7B.4 /REP_DB=WormBase Gene ID /WP=CE16593 /TR=O62404 /GB=CAA16301.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075267(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075267 NCBI Caenorhabditis elegans Y17D7B.4 (Y17D7B.4) mRNA, complete cds. 11/11 None
SNAP00000003522 ENSEMBL cdna:SNAP chromosome:CEL140:V:18778812:18779261:-1 11/11 None
GENEFINDER00000003526 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18778812:18779261:-1 11/11 None
Y17D7B.4 ENSEMBL cdna:known chromosome:CEL140:V:18778812:18782771:-1 gene:Y17D7B.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18778811-18779261(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y17D7B.4
Entrez Gene 189448 Entrez gene
SwissProt O62404 EMBL-EBI
WormBase CE16593 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16301 Hypothetical protein Y17D7B.4 [Caenorhabditis elegans] ref|NP_507668.1| Y17D7B.4 [Caenorhabditis elegans] 2.0E-81
Sequence
Target Sequence 
>C. ELEGANS:182439_AT
ccaacgcctcattaaccgtgtcaagcgattttgcgtcaaatctggaaggagctttgccat
ctcaacccattacgcaagcgaatcctcgtgcggagcagacgctcatgaccacttacatgt
catctactacgaatcaagcggatcctaaaaccttcgaggaacagtttgtaaacctcttgg
gaacttttacaccaagtcaagccgtttgcaatgtttcgaatgtggactgcggtacctacg
tcaggggcccagaaacttggtcgtcttgcaaactgggaacacaggcaatcgccccgaatg
caagttacattcagattcgcgtacaagacaagcactcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCAACGCCTCATTAACCGTGTCAAG 688 275 44 Antisense
TGGAAGGAGCTTTGCCATCTCAACC 226 547 86 Antisense
ACGCAAGCGAATCCTCGTGCGGAGC 628 91 115 Antisense
GTGCGGAGCAGACGCTCATGACCAC 330 479 131 Antisense
GACCACTTACATGTCATCTACTACG 620 381 150 Antisense
TTACACCAAGTCAAGCCGTTTGCAA 294 683 230 Antisense
GAATGTGGACTGCGGTACCTACGTC 147 331 261 Antisense
TCAGGGGCCCAGAAACTTGGTCGTC 230 607 284 Antisense
GGTCGTCTTGCAAACTGGGAACACA 366 503 302 Antisense
GCAATCGCCCCGAATGCAAGTTACA 193 321 328 Antisense
GATTCGCGTACAAGACAAGCACTCG 222 433 357 Antisense
Sequence Source Affymetrix Proprietary Database