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[182438_s_at]

Description C01G10.8 /REP_DB=WormBase Gene ID /WP=CE07817 /TR=Q93168 /GB=CAB02710.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 47      6grp_total > 26      4grp_total > 24      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5002
1 2 3 4 range
A 3992.4
(-3)
P 		6667.3
(0.8)
P 		7277
(1.7)
P 		8179.7
(3)
P 		4187
B 4352.9
(-3)
P 		5808.5
(-1)
P 		6504.2
(-0.1)
P 		8785.3
(3)
P 		4432
C 4288.7
(-3)
P 		5870.5
(-1)
P 		7250.6
(0.8)
P 		8994.6
(3)
P 		4706
avr 4211.3
(-3) 		6115.4
(-0.4) 		7010.6
(0.8) 		8653.2
(3) 		4442

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1663
1 2 3 4 5 6 range
A 4803.2
(3)
P 		4607.7
(2.3)
P 		4019.3
(0.2)
P 		3891.4
(-0.3)
P 		3140.2
(-3)
P 		3836.8
(-0.5)
P 		1663
B 4319.5
(3)
P 		4198.7
(2.2)
P 		3414.3
(-3)
P 		3833.9
(-0.2)
P 		3992.7
(0.8)
P 		4052.9
(1.2)
P 		905
C 4135.4
(3)
P 		4061.4
(2.4)
P 		3863.3
(0.8)
P 		3397.9
(-3)
P 		3620.5
(-1.2)
P 		3986.6
(1.8)
P 		738
avr 4419.4
(3) 		4289.3
(2.1) 		3765.6
(-1.7) 		3707.7
(-2.1) 		3584.5
(-3) 		3958.8
(-0.3) 		835
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1330
1 2 3 4 range
A 1453.6
(-0.8)
P 		1447.3
(-0.9)
P 		1902.3
(3)
P 		1197.3
(-3)
P 		705
B 1388.1
(-3)
P 		1434.6
(-2.4)
P 		1507.2
(-1.5)
P 		1872.2
(3)
P 		484
C 1419.7
(-3)
P 		1687.8
(-1.5)
P 		2527.1
(3)
P 		1516.6
(-2.5)
P 		1107
avr 1420.5
(-3) 		1523.2
(-1.9) 		1978.9
(3) 		1528.7
(-1.8) 		558

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 955
1 2 3 4 5 6 range
A 885.4
(-2.9)
P 		1638.7
(3)
P 		875.3
(-3)
P 		987
(-2.1)
P 		947.6
(-2.4)
P 		934.1
(-2.5)
P 		763
B 1503
(2.1)
P 		1397.6
(1.3)
P 		829.1
(-3)
P 		1015.5
(-1.6)
P 		1622.2
(3)
P 		1511.3
(2.2)
P 		793
C 1532.8
(3)
P 		1239.3
(0.9)
P 		983.3
(-0.9)
P 		683.3
(-3)
P 		1171.5
(0.4)
P 		1334.6
(1.6)
P 		850
avr 1307.1
(1.7) 		1425.2
(3) 		895.9
(-3) 		895.3
(-3) 		1247.1
(1) 		1260
(1.1) 		530
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182438_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12915
Sequence Type Exemplar sequence
Representative Public ID C01G10.8 NCBI
Target Description C01G10.8 /REP_DB=WormBase Gene ID /WP=CE07817 /TR=Q93168 /GB=CAB02710.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074314(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074314 NCBI Caenorhabditis elegans C01G10.8 (C01G10.8) mRNA, complete cds. 11/11 None
SNAP00000004618 ENSEMBL cdna:SNAP chromosome:CEL140:V:15082754:15087959:-1 11/11 None
GENEFINDER00000004633 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15086784:15087959:-1 11/11 None
C01G10.8.2 ENSEMBL cdna:known chromosome:CEL140:V:15086645:15087971:-1 gene:C01G10.8 11/11 None
C01G10.8.1 ENSEMBL cdna:known chromosome:CEL140:V:15086645:15087968:-1 gene:C01G10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15086783-15087959(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G10.8
Entrez Gene 180017 Entrez gene
SwissProt Q93168 EMBL-EBI
WormBase CE07817 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256663_AT Aha1 domain-containing protein at
CANINE:1583790_AT similar to Activator of 90 kDa heat shock protein ATPase homolog 1 (AHA1) (p38) cfa
CANINE_2:CFA.18729.1.S1_S_AT similar to Activator of 90 kDa heat shock protein ATPase homolog 1 (AHA1) (p38) cfa
CANINE_2:CFA.6283.1.A1_S_AT similar to Activator of 90 kDa heat shock protein ATPase homolog 1 (AHA1) (p38) cfa
CANINE_2:CFAAFFX.26337.1.S1_AT similar to Activator of 90 kDa heat shock protein ATPase homolog 1 (AHA1) (p38) cfa
DROSOPHILA_2:1641168_S_AT dm
DROSGENOME1:155036_AT dm
CHICKEN:GGA.4814.1.S1_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) gga
CHICKEN:GGAAFFX.23236.1.S1_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) gga
HG-U133A:201491_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) hs
HG-U133_PLUS_2:201491_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) hs
HG-FOCUS:201491_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) hs
HG-U133A_2:201491_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) hs
HU35KSUBA:W79409_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) hs
HU35KSUBC:RC_AA423801_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) hs
U133_X3P:G6912279_3P_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) hs
HG-U95AV2:40979_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) hs
MOUSE430_2:1444500_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) mm
MOE430B:1444500_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) mm
MOE430A:1424147_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) mm
MOUSE430A_2:1424147_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) mm
MOUSE430_2:1424147_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast) mm
MU19KSUBC:TC39216_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast), mRNA (cDNA clone MGC:36618 IMAGE:5346745) mm
MU19KSUBC:TC39218_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast), mRNA (cDNA clone MGC:36618 IMAGE:5346745) mm
MU19KSUBC:TC39218_G_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast), mRNA (cDNA clone MGC:36618 IMAGE:5346745) mm
MU19KSUBC:TC39219_AT AHA1, activator of heat shock 90kDa protein ATPase homolog 1 (yeast), mRNA (cDNA clone MGC:36618 IMAGE:5346745) mm
YEAST_2:1778720_AT Co-chaperone that binds to Hsp82p and activates its ATPase activity; similar to Hch1p; expression is regulated by stresses such as heat shock Sc
Protein Similarities
Method ID Description E-Value
blast CAB02710 Hypothetical protein C01G10.8 [Caenorhabditis elegans] ref|NP_506715.1| C01G10.8 [Caenorhabditis elegans] 0.0
blast CAB02716 Hypothetical protein C01G10.10 [Caenorhabditis elegans] ref|NP_506713.1| C01G10.10 [Caenorhabditis elegans] 0.0
blast CAE66320 Hypothetical protein CBG11571 [Caenorhabditis briggsae] 1.0E-180
Protein Domains
Database ID Description E-Value
Pfam IPR007821 EMBL-EBI Protein of unknown function DUF704 1.4E-30
Pfam IPR000905 EMBL-EBI Peptidase M22, glycoprotease 6.4E-116
Sequence
Target Sequence 
>C. ELEGANS:182438_S_AT
attcagcaagggtctcattctgccaactgataaagtgaagccacaagtcgttactactgg
aaagacttcagtcgttgacaaacgtcagttccaaaacactgttgtcgcggaaaaggacgc
ttccacttctggaaatgaagtgttctccaccaaagaggtttcaacttccgatacctacaa
ggccacaccggatagagttttcgaggcgctcacagagactcaattcgttcgtggatggac
aaacaattcgatcggagagtggaatttcaaggaaggaggatcatttgcattgttcgggga
aaacgtgactggaacattcgagaagattgagccgaacaaggagattgtgaagaaatggcg
actgaaaaagtatccaaacaatcatcatgcaaccatccatttccagttgaaagatactgg
atctggaacggatatcaaaatcatcgctaaagatgttccaactcatctcgctgaagaaac
tcaacaaggactcgatcgttactacctttcaagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCAGCAAGGGTCTCATTCTGCCA 396 11 492 Antisense
GTGAAGCCACAAGTCGTTACTACTG 13 483 526 Antisense
GTCGCGGAAAAGGACGCTTCCACTT 632 473 595 Antisense
TCAACTTCCGATACCTACAAGGCCA 155 631 652 Antisense
CAAGGCCACACCGGATAGAGTTTTC 238 169 669 Antisense
GTTTTCGAGGCGCTCACAGAGACTC 92 449 688 Antisense
ACAGAGACTCAATTCGTTCGTGGAT 34 109 703 Antisense
AAGGAGGATCATTTGCATTGTTCGG 703 159 764 Antisense
ATCATGCAACCATCCATTTCCAGTT 88 29 875 Antisense
AAGATGTTCCAACTCATCTCGCTGA 544 155 941 Antisense
TCGATCGTTACTACCTTTCAAGCAT 541 603 983 Antisense
Sequence Source Affymetrix Proprietary Database