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[182437_at]

Description F07G6.1 /REP_DB=WormBase Gene ID /WP=CE07034 /TR=Q19173 /GB=AAA96076.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 54      4grp_total > 02      6grp_cgc > 92      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 43.1
(-1.6)
A 		24.4
(-3)
A 		65.8
(0.1)
A 		105
(3)
A 		81
B 40
(-0.3)
A 		53
(3)
A 		29.3
(-3)
A 		45.8
(1.2)
P 		24
C 37.8
(-2.4)
A 		32.7
(-2.7)
A 		29.1
(-3)
A 		111.7
(3)
P 		83
avr 40.3
(-2.6) 		36.7
(-3) 		41.4
(-2.4) 		87.5
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 43.7
(0.4)
A 		35.6
(-1)
A 		47.1
(1)
M 		43.9
(0.5)
P 		24.2
(-3)
A 		58.2
(3)
P 		34
B 32.9
(-0.8)
A 		37.1
(-0.3)
A 		40.4
(0.2)
A 		60.8
(3)
A 		42.3
(0.5)
A 		17.1
(-3)
A 		44
C 24.3
(-0.8)
A 		38.5
(0.9)
P 		55.8
(3)
A 		6.5
(-3)
A 		15.1
(-2)
A 		30.3
(-0.1)
M 		49
avr 33.6
(-1.1) 		37.1
(-0.1) 		47.8
(3) 		37.1
(-0.1) 		27.2
(-3) 		35.2
(-0.7) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15.7
(2.2)
A 		5.3
(-3)
A 		17.2
(3)
A 		15.4
(2.1)
A 		12
B 12.8
(2.7)
A 		13.1
(3)
A 		6.8
(-3)
A 		9.8
(-0.1)
P 		6
C 12.5
(-1)
A 		9.4
(-3)
A 		10.2
(-2.5)
A 		18.8
(3)
P 		9
avr 13.7
(1.9) 		9.3
(-3) 		11.4
(-0.7) 		14.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8
(-2.4)
A 		12.7
(1.7)
A 		10.3
(-0.4)
M 		11.1
(0.3)
P 		7.3
(-3)
A 		14.2
(3)
P 		7
B 11.4
(-0.2)
A 		12.3
(0.3)
A 		9.8
(-1.1)
A 		16.1
(2.4)
A 		17.2
(3)
A 		6.4
(-3)
A 		11
C 9
(0.6)
A 		11.8
(1.9)
P 		14.2
(3)
A 		1.3
(-3)
A 		4.9
(-1.3)
A 		10.1
(1.1)
M 		13
avr 9.5
(-3) 		12.3
(3) 		11.4
(1.1) 		9.5
(-3) 		9.8
(-2.4) 		10.2
(-1.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182437_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18269
Sequence Type Exemplar sequence
Representative Public ID F07G6.1 NCBI
Target Description F07G6.1 /REP_DB=WormBase Gene ID /WP=CE07034 /TR=Q19173 /GB=AAA96076.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075918(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075918 NCBI Caenorhabditis elegans DystroGlycaN family member (dgn-3) (dgn-3) mRNA, complete cds. 11/11 None
F07G6.1 ENSEMBL cdna:known chromosome:CEL140:X:1729853:1732213:1 gene:F07G6.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009971 8/11 Cross Hyb Matching Probes None
GENEFINDER00000009994 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1729852-1732213(+) 73.19 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dgn-3
Ensembl F07G6.1
Entrez Gene 184149 Entrez gene
SwissProt Q19173 EMBL-EBI
WormBase CE07034 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508319 DystroGlycaN family member (dgn-3) [Caenorhabditis elegans] gb|AAA96076.1| Dystroglycan protein 3 [Caenorhabditis elegans] 0.0
blast AAC17001 Dystroglycan protein 2 [Caenorhabditis elegans] ref|NP_508253.1| DystroGlycaN family member (dgn-2) [Caenorhabditis elegans] 5.0E-15
blast CAE69891 Hypothetical protein CBG16240 [Caenorhabditis briggsae] 6.0E-14
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508319.1 2 191-213,277-299
F07G6.1 2 191-213,277-299
Sequence
Target Sequence 
>C. ELEGANS:182437_AT
tgcgattttaacagcttccactcaatgcttacaaaaatgacaaatacggacggtagcctc
aaggacgcgtttgtgctttcgatgttccccgactattccgtccatagtctcaccttcgaa
cgttttgaggaatgcgctgatcatccgacatcccagctgccaacgtccatgcctgctcct
tctggtgagcaaattgtgttgtattttattgttctatttggcgccagttatggtttggcg
atgcttttttatggatgttatatttgcttgagcaggcaaattgatagagctcagaaacgc
agtgctggaagaattcacaagaactatcggagagtggcgacagatcacagtgagaagact
gttagtaatgacaagcccaaaaatatcagccatatcagactacttccagatattttaaat
gtcagaactgtcatgacgaaaaaaaaaatatttttttcgatttattttttattttttggc
gaaatgaaaagtttatatgccctaatgcatgactttttggtctcgccatattcgcttaag
ttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGATTTTAACAGCTTCCACTCAA 165 579 388 Antisense
TACGGACGGTAGCCTCAAGGACGCG 438 623 432 Antisense
TCAAGGACGCGTTTGTGCTTTCGAT 252 633 446 Antisense
CCGACTATTCCGTCCATAGTCTCAC 448 263 476 Antisense
ATAGTCTCACCTTCGAACGTTTTGA 10 23 491 Antisense
TGAGGAATGCGCTGATCATCCGACA 333 567 513 Antisense
ATGCCTGCTCCTTCTGGTGAGCAAA 357 41 556 Antisense
TTGGCGATGCTTTTTTATGGATGTT 694 707 622 Antisense
TCAGCCATATCAGACTACTTCCAGA 562 623 773 Antisense
ATGCATGACTTTTTGGTCTCGCCAT 451 43 892 Antisense
TCTCGCCATATTCGCTTAAGTTGTC 14 607 908 Antisense
Sequence Source Affymetrix Proprietary Database