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[182436_at]

Description H19J13.1 /REP_DB=WormBase Gene ID /WP=CE16180 /TR=O45325 /GB=CAA15637.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 42      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 12.8
(-3)
A 		167.3
(3)
P 		86.9
(-0.1)
A 		52.8
(-1.4)
A 		155
B 23.6
(-3)
A 		192.6
(3)
P 		104.9
(-0.1)
A 		67.9
(-1.4)
A 		169
C 29.8
(-2.6)
A 		204
(3)
P 		88.2
(-0.7)
A 		16.5
(-3)
A 		188
avr 22.1
(-3) 		188
(3) 		93.3
(-0.4) 		45.7
(-2.1) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 200.3
(3)
A 		123.9
(0.2)
A 		34.4
(-3)
A 		83.4
(-1.2)
A 		62.8
(-2)
A 		75.1
(-1.5)
A 		166
B 105.9
(3)
A 		84.6
(0.8)
M 		71.6
(-0.5)
A 		75.7
(-0.1)
A 		47.2
(-3)
A 		62.9
(-1.4)
P 		59
C 178.6
(3)
A 		102.6
(-0.9)
A 		107.2
(-0.6)
A 		81.5
(-1.9)
A 		60.3
(-3)
A 		67.6
(-2.6)
A 		118
avr 161.6
(3) 		103.7
(-0.3) 		71.1
(-2.2) 		80.2
(-1.7) 		56.8
(-3) 		68.5
(-2.3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 4.7
(-3)
A 		36.3
(3)
P 		22.7
(0.4)
A 		7.7
(-2.4)
A 		32
B 7.5
(-3)
A 		47.6
(3)
P 		24.3
(-0.5)
A 		14.5
(-2)
A 		40
C 9.9
(-2.2)
A 		58.6
(3)
P 		30.7
(-0)
A 		2.8
(-3)
A 		56
avr 7.4
(-3) 		47.5
(3) 		25.9
(-0.2) 		8.3
(-2.9) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 36.9
(1.8)
A 		44.1
(3)
A 		7.5
(-3)
A 		21.2
(-0.8)
A 		19
(-1.1)
A 		18.3
(-1.2)
A 		37
B 36.9
(3)
A 		28.2
(0.3)
M 		17.4
(-3)
A 		20.1
(-2.2)
A 		19.2
(-2.4)
A 		23.4
(-1.2)
P 		20
C 66.2
(3)
A 		31.3
(-1.2)
A 		27.3
(-1.7)
A 		16.4
(-3)
A 		19.5
(-2.6)
A 		22.6
(-2.3)
A 		50
avr 46.7
(3) 		34.5
(0.5) 		17.4
(-3) 		19.2
(-2.6) 		19.2
(-2.6) 		21.4
(-2.2) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182436_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16605
Sequence Type Exemplar sequence
Representative Public ID H19J13.1 NCBI
Target Description H19J13.1 /REP_DB=WormBase Gene ID /WP=CE16180 /TR=O45325 /GB=CAA15637.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077644 NCBI Caenorhabditis elegans H19J13.1 (H19J13.1) mRNA, complete cds. 11/11 None
H19J13.1 ENSEMBL cdna:known chromosome:CEL140:X:12267019:12270862:-1 gene:H19J13.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024781 5/11 Cross Hyb Matching Probes None
SNAP00000030415 3/11 Cross Hyb Matching Probes None
GENEFINDER00000030417 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12267018-12270854(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H19J13.1
Entrez Gene 186752 Entrez gene
SwissProt O45325 EMBL-EBI
WormBase CE16180 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1631554_AT dm
DROSGENOME1:144530_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA15637 Hypothetical protein H19J13.1 [Caenorhabditis elegans] emb|CAA93534.1| Hypothetical protein H19J13.1 [Caenorhabditis elegans] ref|NP_510045.1| H19J13.1 [Caenorhabditis elegans] 0.0
blast CAE69908 Hypothetical protein CBG16260 [Caenorhabditis briggsae] 0.0
blast CAE58382 Hypothetical protein CBG01511 [Caenorhabditis briggsae] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR004878 EMBL-EBI Protein of unknown function DUF270 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510045.1 12 60-82,97-119,157-179,189-211,223-245,314-336,365-387,397-419,439-461,471-493,514-531,546-565
H19J13.1 12 60-82,97-119,157-179,189-211,223-245,314-336,365-387,397-419,439-461,471-493,514-531,546-565
Sequence
Target Sequence 
>C. ELEGANS:182436_AT
aattgcccttggcgcatgtatcattggtctatggagaatgcgacatcttcagtaccgtct
acatgctcacggggaagtaattgatgagattttgctgataattggtttgattggagaaat
tttgtactgtgcagttggaatcgatgtattcataacttgtcgcagatctgctgatctcac
tgttagcgcattgccggcgtttgtttttgtgattcgaatgattcaagttgtggttcaagc
cgctttcatactcactacttcaagacttcgctgtctttccaaatactcgatgaaatataa
acctggaaaggaaatcataacatttttactcgtctccaatgttacattattcgtcttcca
cacttttgaaggcatgaaatcaagtttcgggttttctagcaaagcagctactcaatataa
ttacattatttacgcagtgggaccattgctggttttctatagattccatagttcagcatg
tcttgccgagatatggaagcacacatacagcacaaaaagcaacgaatacgatcatgaaca
catgtccctttctgatagtaacttaaccgcaatcaccccaatttctgatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCCCTTGGCGCATGTATCATT 28 179 1239 Antisense
GACATCTTCAGTACCGTCTACATGC 125 371 1280 Antisense
GTCGCAGATCTGCTGATCTCACTGT 398 475 1397 Antisense
TTGCCGGCGTTTGTTTTTGTGATTC 401 691 1429 Antisense
GTGGTTCAAGCCGCTTTCATACTCA 230 487 1468 Antisense
CTCACTACTTCAAGACTTCGCTGTC 290 227 1489 Antisense
CTTCGCTGTCTTTCCAAATACTCGA 606 219 1504 Antisense
CATAACATTTTTACTCGTCTCCAAT 24 215 1554 Antisense
CAATGTTACATTATTCGTCTTCCAC 400 183 1575 Antisense
AACACATGTCCCTTTCTGATAGTAA 315 135 1775 Antisense
CGCAATCACCCCAATTTCTGATATC 191 255 1806 Antisense
Sequence Source Affymetrix Proprietary Database