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[182435_at]

Description W06D11.2 /REP_DB=WormBase Gene ID /WP=CE06553 /TR=Q23197 /GB=CAA93535.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 30      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 62.7
(3)
A 		25.6
(-3)
A 		42.4
(-0.3)
A 		43.5
(-0.1)
A 		37
B 42.8
(-1.2)
A 		55.1
(3)
A 		48.4
(0.7)
A 		37.7
(-3)
A 		17
C 44.7
(1.2)
A 		39.2
(0.6)
A 		10.6
(-3)
A 		58.9
(3)
A 		48
avr 50.1
(3) 		40
(-0.7) 		33.8
(-3) 		46.7
(1.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 63
(3)
A 		37.5
(0.1)
A 		15.5
(-2.5)
A 		42.2
(0.6)
A 		10.9
(-3)
A 		56.1
(2.2)
A 		52
B 47.1
(1.4)
A 		25.6
(-1.4)
A 		13.6
(-3)
A 		56.2
(2.6)
A 		19.3
(-2.3)
A 		59.3
(3)
A 		46
C 38.6
(-0.4)
A 		32.4
(-2.8)
A 		47.3
(3)
A 		43.6
(1.6)
A 		32.5
(-2.7)
A 		31.8
(-3)
A 		16
avr 49.6
(3) 		31.8
(-0.7) 		25.5
(-2) 		47.3
(2.5) 		20.9
(-3) 		49.1
(2.9) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 22.8
(3)
A 		5.6
(-3)
A 		11.1
(-1.1)
A 		6.4
(-2.7)
A 		17
B 13.7
(3)
A 		13.6
(2.9)
A 		11.2
(0.4)
A 		8
(-3)
A 		6
C 14.8
(3)
A 		11.3
(1.1)
A 		3.7
(-3)
A 		9.9
(0.4)
A 		11
avr 17.1
(3) 		10.2
(-1.6) 		8.7
(-2.6) 		8.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 11.6
(1.8)
A 		13.3
(2.8)
A 		3.4
(-2.9)
A 		10.7
(1.3)
A 		3.3
(-3)
A 		13.7
(3)
A 		10
B 16.4
(1.2)
A 		8.5
(-1.3)
A 		3.3
(-3)
A 		14.9
(0.7)
A 		7.8
(-1.6)
A 		22.1
(3)
A 		19
C 14.3
(3)
A 		9.9
(-1.8)
A 		12
(0.5)
A 		8.8
(-3)
A 		10.5
(-1.1)
A 		10.6
(-1)
A 		6
avr 14.1
(2.1) 		10.6
(-0.2) 		6.2
(-3) 		11.5
(0.4) 		7.2
(-2.4) 		15.5
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182435_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16560
Sequence Type Exemplar sequence
Representative Public ID W06D11.2 NCBI
Target Description W06D11.2 /REP_DB=WormBase Gene ID /WP=CE06553 /TR=Q23197 /GB=CAA93535.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077652 NCBI Caenorhabditis elegans W06D11.2 (W06D11.2) mRNA, complete cds. 11/11 None
SNAP00000035022 ENSEMBL cdna:SNAP chromosome:CEL140:X:12296102:12296565:-1 11/11 None
GENEFINDER00000035027 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12296102:12296565:-1 11/11 None
W06D11.2 ENSEMBL cdna:known chromosome:CEL140:X:12296034:12296565:-1 gene:W06D11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12296101-12296565(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W06D11.2
Entrez Gene 181389 Entrez gene
SwissProt Q23197 EMBL-EBI
WormBase CE06553 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93535 Hypothetical protein W06D11.2 [Caenorhabditis elegans] ref|NP_510053.1| W06D11.2 [Caenorhabditis elegans] 8.0E-65
blast CAE61430 Hypothetical protein CBG05310 [Caenorhabditis briggsae] 1.0E-12
blast CAE63026 Hypothetical protein CBG07282 [Caenorhabditis briggsae] 3.0E-10
Sequence
Target Sequence 
>C. ELEGANS:182435_AT
tgttccagcaaatccggtaccacgaactcttctcaccgacgaggaggttcgtcatcttta
cggaaagcagcgatgtctcaacaaactctttgataatccgagagttgcccaccccgcaat
ccaccaaacagtggtctttatatttgactccctcagctcaattattgctcttaacaaact
acctcatacaaaagaaaatcggcaacaagtcgagtgcggattcaagtcaatgcaatatct
cgaagacttgatcattcgaattgttgtacgcggagaagatccggctgtaatacacgaagg
acacctacgtcactgggaagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCCAGCAAATCCGGTACCACGA 211 563 21 Antisense
AACTCTTCTCACCGACGAGGAGGTT 626 139 45 Antisense
GAGGAGGTTCGTCATCTTTACGGAA 629 401 61 Antisense
GCAGCGATGTCTCAACAAACTCTTT 251 315 87 Antisense
ACCCCGCAATCCACCAAACAGTGGT 342 87 131 Antisense
GTGGTCTTTATATTTGACTCCCTCA 170 489 151 Antisense
ACTCCCTCAGCTCAATTATTGCTCT 178 99 167 Antisense
TGCTCTTAACAAACTACCTCATACA 679 579 186 Antisense
GTCGAGTGCGGATTCAAGTCAATGC 21 475 229 Antisense
GGAGAAGATCCGGCTGTAATACACG 27 519 292 Antisense
AGGACACCTACGTCACTGGGAAGCT 386 55 318 Antisense
Sequence Source Affymetrix Proprietary Database