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[182434_s_at]

Description F20B6.5 /REP_DB=WormBase Gene ID /WP=CE04427 /TR=Q19628 /GB=AAA82313.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 44.6
(-1.2)
A 		33.2
(-3)
A 		54.8
(0.5)
A 		70.5
(3)
A 		37
B 68
(3)
A 		15.1
(-3)
A 		19.5
(-2.5)
A 		25.7
(-1.8)
A 		53
C 26.7
(-3)
A 		68
(2.8)
A 		26.5
(-3)
A 		69.2
(3)
A 		43
avr 46.4
(0.6) 		38.8
(-1.5) 		33.6
(-3) 		55.1
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 42.8
(-0.5)
A 		18.1
(-3)
A 		41.7
(-0.6)
A 		78.1
(3)
A 		54.3
(0.6)
A 		22.3
(-2.6)
A 		60
B 12.7
(-2.9)
A 		68.8
(0.2)
P 		119.3
(3)
A 		35.4
(-1.6)
A 		25.2
(-2.2)
A 		10.1
(-3)
A 		109
C 37.2
(-1.3)
A 		50.8
(-0.4)
A 		22.5
(-2.3)
A 		100.7
(3)
A 		71.2
(1)
A 		11.4
(-3)
A 		89
avr 30.9
(-1.3) 		45.9
(0.3) 		61.2
(1.9) 		71.4
(3) 		50.2
(0.8) 		14.6
(-3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16.2
(3)
A 		7.2
(-3)
A 		14.3
(1.7)
A 		10.3
(-0.9)
A 		9
B 21.7
(3)
A 		3.7
(-3)
A 		4.5
(-2.7)
A 		5.5
(-2.4)
A 		18
C 8.8
(-3)
A 		19.5
(3)
A 		9.2
(-2.8)
A 		11.7
(-1.4)
A 		11
avr 15.6
(3) 		10.1
(-2.2) 		9.3
(-2.9) 		9.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 7.9
(-2)
A 		6.4
(-2.6)
A 		9.1
(-1.5)
A 		19.8
(3)
A 		16.4
(1.6)
A 		5.4
(-3)
A 		14
B 4.4
(-2.9)
A 		22.9
(1.5)
P 		29
(3)
A 		9.4
(-1.7)
A 		10.2
(-1.5)
A 		3.8
(-3)
A 		25
C 13.8
(0.1)
A 		15.5
(0.7)
A 		5.7
(-2.4)
A 		20.3
(2.2)
A 		23
(3)
A 		3.8
(-3)
A 		19
avr 8.7
(-0.8) 		14.9
(2.2) 		14.6
(2.1) 		16.5
(3) 		16.5
(3) 		4.3
(-3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182434_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16823
Sequence Type Exemplar sequence
Representative Public ID F20B6.5 NCBI
Target Description F20B6.5 /REP_DB=WormBase Gene ID /WP=CE04427 /TR=Q19628 /GB=AAA82313.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076312(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076312 NCBI Caenorhabditis elegans F20B6.5 (F20B6.5) mRNA, complete cds. 11/11 None
GENEFINDER00000010545 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4196918:4199865:-1 10/11 None
SNAP00000010535 ENSEMBL cdna:SNAP chromosome:CEL140:X:4198584:4199865:-1 11/11 None
F20B6.5 ENSEMBL cdna:known chromosome:CEL140:X:4198584:4199865:-1 gene:F20B6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4198584-4199866(-) 93.82 100.0
Public Domain and Genome References
Gene Title
Ensembl F20B6.5
Entrez Gene 180693 Entrez gene
SwissProt Q19628 EMBL-EBI
WormBase CE04427 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82313 Hypothetical protein F20B6.5 [Caenorhabditis elegans] ref|NP_508713.1| F20B6.5 [Caenorhabditis elegans] 1.0E-161
blast AAA82313 Hypothetical protein F20B6.5 [Caenorhabditis elegans] ref|NP_508713.1| F20B6.5 [Caenorhabditis elegans] 1.0E-140
Sequence
Target Sequence 
>C. ELEGANS:182434_S_AT
agatgtccggagtaagggcaccaccagtcactccccggaaccgacaaagatcggtccgac
cttccggatccaacgctcagccaagcggccgtgcacagccagattatcgtgatactcgtc
aaagaccgtctcaatcgcgagaccgctccaagcagaatcgtacgggaaccccgcatggag
ctgaagaattaggaagagagcctgaccgatcttcaagatctgccagaaatgaaggaccgc
gagccgagaccggaagagaaaagagatcaagtgaggacagaaagcgacaagttccacctg
aggagccacgtcgatcttctcaccaaagcaaaacagccaaaagtgaagaacaaaaaggac
acgatcatccgagaagagtgccaccaccaacatcgccccgtgcatccactgaagaatctt
tctatgagagaattcattcgatcatgcgatcatcttttgctcgtcgacgtgctcgtcgac
gtggtcagggacagatgattcgctctatgaatacattagcgcatttgcacaaatgtacca
cttgccagacggtagcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGTCCGGAGTAAGGGCACCACC 614 65 347 Antisense
CGACAAAGATCGGTCCGACCTTCCG 208 251 388 Antisense
GGCCGTGCACAGCCAGATTATCGTG 117 543 433 Antisense
AAGACCGTCTCAATCGCGAGACCGC 614 153 468 Antisense
GAGACCGCTCCAAGCAGAATCGTAC 272 395 485 Antisense
GAATCGTACGGGAACCCCGCATGGA 427 321 501 Antisense
AAGAGAGCCTGACCGATCTTCAAGA 546 153 540 Antisense
AAGCGACAAGTTCCACCTGAGGAGC 406 149 628 Antisense
GATCATCCGAGAAGAGTGCCACCAC 442 419 709 Antisense
ATCATGCGATCATCTTTTGCTCGTC 100 31 787 Antisense
GTACCACTTGCCAGACGGTAGCACA 506 457 881 Antisense
Sequence Source Affymetrix Proprietary Database