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[182431_at]

Description T06C12.8 /REP_DB=WormBase Gene ID /WP=CE16358 /TR=O18045 /GB=CAB03306.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 17.3
(-1.8)
A 		56.7
(3)
P 		22.2
(-1.2)
A 		7.2
(-3)
A 		50
B 9.7
(-3)
A 		19.1
(1.1)
A 		23.4
(3)
A 		22.7
(2.7)
A 		14
C 18.1
(-2.8)
A 		33.8
(-1.5)
A 		16.1
(-3)
A 		85.6
(3)
P 		70
avr 15
(-3) 		36.5
(2.5) 		20.6
(-1.6) 		38.5
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 22.8
(1.2)
A 		19.1
(0.2)
A 		21.8
(1)
M 		7.2
(-3)
A 		29.3
(3)
A 		16.6
(-0.4)
A 		22
B 14.8
(-1.2)
A 		27.3
(3)
A 		26.2
(2.6)
A 		17.2
(-0.4)
A 		9.5
(-3)
A 		13
(-1.8)
A 		18
C 5.3
(-3)
A 		48.3
(3)
P 		22.6
(-0.6)
A 		29.7
(0.4)
A 		16.6
(-1.4)
A 		16.6
(-1.4)
P 		43
avr 14.3
(-3) 		31.6
(3) 		23.5
(0.2) 		18
(-1.7) 		18.5
(-1.5) 		15.4
(-2.6) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.3
(-0.2)
A 		12.3
(3)
P 		5.8
(-0.5)
A 		1.1
(-3)
A 		11
B 3.1
(-3)
A 		4.7
(1.2)
A 		5.4
(3)
A 		4.8
(1.4)
A 		2
C 6
(-2.7)
A 		9.7
(-0.2)
A 		5.6
(-3)
A 		14.4
(3)
P 		9
avr 5.1
(-3) 		8.9
(3) 		5.6
(-2.2) 		6.8
(-0.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 4.2
(-0.9)
A 		6.8
(1.3)
A 		4.7
(-0.5)
M 		1.8
(-3)
A 		8.8
(3)
A 		4.1
(-1)
A 		7
B 5.2
(-1.4)
A 		9.1
(3)
A 		6.4
(-0.1)
A 		4.5
(-2.2)
A 		3.8
(-3)
A 		4.8
(-1.9)
A 		5
C 2
(-3)
A 		14.7
(3)
P 		5.7
(-1.3)
A 		6
(-1.1)
A 		5.4
(-1.4)
A 		5.6
(-1.3)
P 		13
avr 3.8
(-3) 		10.2
(3) 		5.6
(-1.3) 		4.1
(-2.7) 		6
(-0.9) 		4.8
(-2.1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182431_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14055
Sequence Type Exemplar sequence
Representative Public ID T06C12.8 NCBI
Target Description T06C12.8 /REP_DB=WormBase Gene ID /WP=CE16358 /TR=O18045 /GB=CAB03306.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074568(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074568 NCBI Caenorhabditis elegans T06C12.8 (T06C12.8) mRNA, complete cds. 11/11 None
GENEFINDER00000035482 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15884578:15887374:-1 10/11 None
T06C12.8 ENSEMBL cdna:known chromosome:CEL140:V:15884212:15887374:-1 gene:T06C12.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15884211-15887374(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06C12.8
Entrez Gene 188167 Entrez gene
SwissProt O18045 EMBL-EBI
WormBase CE16358 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03306 Hypothetical protein T06C12.8 [Caenorhabditis elegans] ref|NP_506969.1| T06C12.8 [Caenorhabditis elegans] 0.0
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 1.0E-167
blast CAB04373 Hypothetical protein F41D3.2 [Caenorhabditis elegans] ref|NP_493091.1| F41D3.2 [Caenorhabditis elegans] 1.0E-164
blast CAB04373 Hypothetical protein F41D3.2 [Caenorhabditis elegans] ref|NP_493091.1| F41D3.2 [Caenorhabditis elegans] 1.0E-148
blast AAO91724 Hypothetical protein F37C4.2 [Caenorhabditis elegans] ref|NP_500432.3| F37C4.2 [Caenorhabditis elegans] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506969.1 7 80-102,141-163,172-194,198-217,258-280,340-357,362-384
T06C12.8 7 80-102,141-163,172-194,198-217,258-280,340-357,362-384
GENEFINDER00000035482 7 80-102,141-163,172-194,198-217,258-280,340-357,362-384
Sequence
Target Sequence 
>C. ELEGANS:182431_AT
aggagcatcgggtgcttgtgagcctttgtaccagttttttcacaaaggtgagacgtataa
aacagatttgaaagattttgagcaacgaatagaaaatgagaagccagattttttatttgt
gattacaaagtcgattgtgatgaagatagcacccatgttgaaaaatggaacggatcccgt
ggttattgataagatgctcataaacgcaacaagtaacagtttgtcacggaaaagatatgc
tcaacttgagaaagactgtggtggtaaatgcgagctggtggattacaagtccgtatttta
caacatctctactggaacttatcgatttttcgacacaaatgggttctcatatttatcggt
gttctctcaattgacaccacttggtctagaccgggtcagacatatttggacgggaatttg
caacagtttaattgtttgtgatctaataaatacttgtttctttcaatttttaataaaagt
tattagtaagcacatttttcaaataaaaaagtttcgcgtttccatactcacccaacaaac
agaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGCATCGGGTGCTTGTGAGCCT 89 57 1431 Antisense
TGTGAGCCTTTGTACCAGTTTTTTC 408 553 1447 Antisense
GAACGGATCCCGTGGTTATTGATAA 41 347 1598 Antisense
GCGAGCTGGTGGATTACAAGTCCGT 316 287 1700 Antisense
AAGTCCGTATTTTACAACATCTCTA 224 159 1717 Antisense
CAACATCTCTACTGGAACTTATCGA 282 189 1731 Antisense
GGGTTCTCATATTTATCGGTGTTCT 303 497 1771 Antisense
TGTTCTCTCAATTGACACCACTTGG 169 563 1790 Antisense
GACACCACTTGGTCTAGACCGGGTC 88 365 1803 Antisense
GACCGGGTCAGACATATTTGGACGG 504 381 1819 Antisense
TTCCATACTCACCCAACAAACAGAA 213 701 1950 Antisense
Sequence Source Affymetrix Proprietary Database