[Home] | [Total List]

[182430_at]

Description K08B5.1 /REP_DB=WormBase Gene ID /WP=CE04727 /TR=Q21309 /GB=AAA82339.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 90.8
(-3)
A 		182.5
(1.9)
M 		115
(-1.7)
A 		203.1
(3)
P 		112
B 171.7
(1.3)
A 		93.6
(-3)
A 		165.3
(1)
P 		201.4
(3)
P 		108
C 109.9
(-3)
A 		114.9
(-2.5)
M 		127.7
(-1.4)
P 		174.8
(3)
P 		65
avr 124.1
(-3) 		130.3
(-2.5) 		136
(-2) 		193.1
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 109.1
(-2.9)
A 		197.7
(0.5)
P 		107.5
(-3)
A 		190.8
(0.2)
P 		263.8
(3)
P 		229.4
(1.7)
P 		156
B 109.1
(-3)
A 		170.6
(-0.5)
P 		114.7
(-2.8)
A 		234.5
(2.1)
P 		203.9
(0.8)
P 		258
(3)
P 		149
C 68.4
(-3)
A 		73.2
(-2.9)
A 		201.9
(1.1)
P 		262
(2.9)
P 		246.7
(2.5)
P 		264.1
(3)
P 		196
avr 95.5
(-3) 		147.2
(-1) 		141.4
(-1.2) 		229.1
(2.2) 		238.1
(2.5) 		250.5
(3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 33.1
(-0.9)
A 		39.6
(3)
M 		30.1
(-2.8)
A 		29.7
(-3)
P 		10
B 54.8
(3)
A 		23.1
(-3)
A 		38.3
(-0.1)
P 		42.9
(0.7)
P 		32
C 36.4
(-0.2)
A 		33
(-1.6)
M 		44.5
(3)
P 		29.5
(-3)
P 		15
avr 41.4
(3) 		31.9
(-3) 		37.6
(0.6) 		34
(-1.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 20.1
(-3)
A 		70.3
(2.1)
P 		23.4
(-2.7)
A 		48.4
(-0.1)
P 		79.6
(3)
P 		55.8
(0.6)
P 		60
B 38
(-2.1)
A 		56.8
(-0.5)
P 		27.8
(-3)
A 		62.1
(0)
P 		82.9
(1.8)
P 		96.2
(3)
P 		68
C 25.4
(-2.7)
A 		22.3
(-3)
A 		51.4
(-0.4)
P 		52.7
(-0.2)
P 		79.8
(2.2)
P 		88.4
(3)
P 		66
avr 27.8
(-3) 		49.8
(-0.5) 		34.2
(-2.3) 		54.4
(0) 		80.8
(3) 		80.1
(2.9) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182430_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17886
Sequence Type Exemplar sequence
Representative Public ID K08B5.1 NCBI
Target Description K08B5.1 /REP_DB=WormBase Gene ID /WP=CE04727 /TR=Q21309 /GB=AAA82339.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078282(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078282 NCBI Caenorhabditis elegans K08B5.1 (K08B5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030735 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16558480:16563052:1 10/11 None
K08B5.1 ENSEMBL cdna:known chromosome:CEL140:X:16558357:16562222:1 gene:K08B5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030732 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16558356-16562222(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08B5.1
Entrez Gene 187132 Entrez gene
SwissProt Q21309 EMBL-EBI
WormBase CE35740 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82339 Hypothetical protein K08B5.1 [Caenorhabditis elegans] ref|NP_510683.2| K08B5.1 [Caenorhabditis elegans] 0.0
blast AAA82339 Hypothetical protein K08B5.1 [Caenorhabditis elegans] ref|NP_510683.2| K08B5.1 [Caenorhabditis elegans] 1.0E-161
blast CAE69960 Hypothetical protein CBG16352 [Caenorhabditis briggsae] 2.0E-82
blast CAE69960 Hypothetical protein CBG16352 [Caenorhabditis briggsae] 9.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510683.2 6 30-52,67-89,149-171,191-213,244-266,295-312
K08B5.1 6 30-52,67-89,149-171,191-213,244-266,295-312
GENEFINDER00000030735 6 22-44,69-91,108-130,150-172,203-225,254-271
Sequence
Target Sequence 
>C. ELEGANS:182430_AT
aacaaatgtacccatattcaccgccagagctccatgactaccaactctactatttcatat
caatgtggctcactcttctaaacgttcttgcattcttcatttttacaattctatggatta
tcaactattatcgtcagaaaatcatcgggaacagtcatcttcaagtcgccctggacagat
acaacctgcatgaaaacatgtcaatgactcgtctcatggcgcccgtcatcatcgttatct
gcctaatggtgttcttggctgaatcgattcttttgctcgcaacaccggagtacaatgagg
acactgtagtgacacatcaagtattaaacgaagttatagagtattccttctatccagagc
tacagctcaccatcatccctttgctctttattgctcttgtgctcgtgctcatcaccctct
catcaaaacttcgagaaaatttcctcttggtttcaaatctttccatctgcttcccagtca
aaatccacaccacggactcaaggtcatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACAAATGTACCCATATTCACCGCC 301 135 242 Antisense
AGAGCTCCATGACTACCAACTCTAC 61 69 267 Antisense
CTCACTCTTCTAAACGTTCTTGCAT 127 229 310 Antisense
GGGAACAGTCATCTTCAAGTCGCCC 611 493 388 Antisense
AAGTCGCCCTGGACAGATACAACCT 645 157 404 Antisense
CGTCATCATCGTTATCTGCCTAATG 256 247 465 Antisense
GAATCGATTCTTTTGCTCGCAACAC 300 329 502 Antisense
AGTATTCCTTCTATCCAGAGCTACA 225 63 581 Antisense
CTTTGCTCTTTATTGCTCTTGTGCT 414 223 620 Antisense
TTCCATCTGCTTCCCAGTCAAAATC 287 701 702 Antisense
CACACCACGGACTCAAGGTCATCTA 498 193 727 Antisense
Sequence Source Affymetrix Proprietary Database