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[182426_at]

Description F35C8.8 /REP_DB=WormBase Gene ID /WP=CE04500 /TR=Q20029 /GB=AAA81712.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 12.5
(-3)
A 		66.6
(3)
A 		21.3
(-2)
A 		51.1
(1.3)
A 		54
B 6.9
(-3)
A 		16.1
(2.8)
A 		15.6
(2.4)
A 		16.5
(3)
A 		10
C 50.4
(0.1)
A 		19.4
(-2.4)
A 		12.1
(-3)
A 		86.9
(3)
A 		75
avr 23.3
(-1.8) 		34
(0) 		16.3
(-3) 		51.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 53.6
(3)
A 		10.5
(-2.8)
A 		39
(1)
A 		14.1
(-2.3)
A 		31.9
(0.1)
A 		8.7
(-3)
A 		45
B 17.5
(3)
A 		12.7
(-0.2)
A 		12.9
(-0)
A 		8.4
(-3)
A 		15.6
(1.7)
A 		9.9
(-2)
A 		9
C 11.4
(-2.4)
A 		39.2
(3)
A 		14.1
(-1.9)
A 		11.2
(-2.5)
A 		8.4
(-3)
A 		9.7
(-2.7)
A 		31
avr 27.5
(3) 		20.8
(0.8) 		22
(1.2) 		11.2
(-2.4) 		18.6
(0) 		9.4
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 4.6
(-3)
A 		14.5
(3)
A 		5.6
(-2.4)
A 		7.5
(-1.2)
A 		10
B 2.2
(-3)
A 		4
(3)
A 		3.6
(1.7)
A 		3.5
(1.3)
A 		2
C 16.7
(3)
A 		5.6
(-2.3)
A 		4.2
(-3)
A 		14.6
(2)
A 		13
avr 7.8
(2) 		8
(2.3) 		4.5
(-3) 		8.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 9.9
(3)
A 		3.7
(-1.8)
A 		8.5
(1.9)
A 		3.6
(-1.8)
A 		9.6
(2.8)
A 		2.1
(-3)
A 		8
B 6.1
(2.7)
A 		4.2
(-0.1)
A 		3.1
(-1.7)
A 		2.2
(-3)
A 		6.3
(3)
A 		3.7
(-0.8)
A 		4
C 4.2
(-1.8)
A 		12
(3)
A 		3.6
(-2.2)
A 		2.3
(-3)
A 		2.7
(-2.8)
A 		3.3
(-2.4)
A 		10
avr 6.7
(3) 		6.6
(2.9) 		5.1
(0.6) 		2.7
(-3) 		6.2
(2.3) 		3
(-2.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182426_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16771
Sequence Type Exemplar sequence
Representative Public ID F35C8.8 NCBI
Target Description F35C8.8 /REP_DB=WormBase Gene ID /WP=CE04500 /TR=Q20029 /GB=AAA81712.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076513 NCBI Caenorhabditis elegans F35C8.8 (F35C8.8) mRNA, complete cds. 11/11 None
F35C8.8 ENSEMBL cdna:known chromosome:CEL140:X:5372114:5374408:-1 gene:F35C8.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043848 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5372114-5374409(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35C8.8
Entrez Gene 185269 Entrez gene
SwissProt Q20029 EMBL-EBI
WormBase CE04500 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81712 Hypothetical protein F35C8.8 [Caenorhabditis elegans] ref|NP_508914.1| F35C8.8 [Caenorhabditis elegans] 1.0E-149
Sequence
Target Sequence 
>C. ELEGANS:182426_AT
ttcaagttcgagtggcttccttcaaaggaaatgttgttgcaaatccgccccacggacaac
cggaaggcgtacagttagcgtctttttttggcggtggcggcaaaatagaaggtgttattg
tgtttatgtatttctcgtctagcaccctcttacttttacacactctctcactctctttct
cttggtgccactttatcatatccggctcttgtggcaaacttacttttgattttttttttc
ttttaaaatccaattataccgtagtttaccgtactctcgattttcagaaacttcgcacag
tatggcttcatcaccaagttcttcctccagccaactccgtaagttatctcataacaatta
ttttgaaaagctctaaatttccaattttcagattagagaaattgcaccacgaacgtcgtc
ggaaagcggaaagtgaggagcagcagaaacagaacagaaacaagaacagaaaattaaaaa
aaaaacggattatcaaaatatcccggagcccagttgcaagcccagttgacaagcttgcag
cctcctcaaaaattgaaccagattctaggagcttcccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAAGTTCGAGTGGCTTCCTTCAA 224 685 323 Antisense
GGAAATGTTGTTGCAAATCCGCCCC 560 525 349 Antisense
GGCGTACAGTTAGCGTCTTTTTTTG 358 535 388 Antisense
TTTATGTATTTCTCGTCTAGCACCC 476 673 445 Antisense
CTTTCTCTTGGTGCCACTTTATCAT 679 221 497 Antisense
TTATCATATCCGGCTCTTGTGGCAA 435 679 515 Antisense
TACCGTAGTTTACCGTACTCTCGAT 159 651 579 Antisense
ACTTCGCACAGTATGGCTTCATCAC 83 105 612 Antisense
CAAAATATCCCGGAGCCCAGTTGCA 248 189 816 Antisense
CCCAGTTGCAAGCCCAGTTGACAAG 221 259 831 Antisense
TGAACCAGATTCTAGGAGCTTCCCC 162 575 876 Antisense
Sequence Source Affymetrix Proprietary Database