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[182425_at]

Description T04C10.3 /REP_DB=WormBase Gene ID /WP=CE06354 /TR=Q22154 /GB=CAA93755.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 28.4
(0.2)
P 		16.9
(-1.3)
A 		3.9
(-3)
A 		50.2
(3)
A 		46
B 26.2
(1)
A 		18.3
(-0.3)
A 		0.9
(-3)
A 		39.3
(3)
A 		38
C 26.8
(-1.2)
P 		2.8
(-2.9)
A 		2.1
(-3)
A 		84.7
(3)
P 		83
avr 27.1
(-0.3) 		12.7
(-1.9) 		2.3
(-3) 		58.1
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 7.6
(-3)
A 		8.7
(-2.8)
A 		38.1
(3)
P 		35.6
(2.5)
A 		12.5
(-2)
A 		23.1
(0)
A 		31
B 20.2
(0.4)
A 		19
(0.1)
A 		7.6
(-3)
A 		8.4
(-2.8)
A 		13.7
(-1.3)
A 		29.6
(3)
A 		22
C 7.9
(-1.6)
A 		8.7
(-1.4)
A 		3.9
(-2.5)
A 		28
(3)
A 		13.1
(-0.4)
A 		1.7
(-3)
A 		26
avr 11.9
(-3) 		12.1
(-2.9) 		16.5
(-0.7) 		24
(3) 		13.1
(-2.4) 		18.1
(0.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 10.3
(3)
P 		3.7
(-1.3)
A 		1
(-3)
A 		7.3
(1.1)
A 		9
B 8.3
(2.9)
A 		4.5
(0.1)
A 		0.2
(-3)
A 		8.4
(3)
A 		8
C 8.9
(0.6)
P 		0.8
(-3)
A 		0.7
(-3)
A 		14.3
(3)
P 		14
avr 9.2
(2.5) 		3
(-1.5) 		0.6
(-3) 		10
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.4
(-3)
A 		3.1
(-1.7)
A 		8.3
(2.4)
P 		9
(3)
A 		3.8
(-1.1)
A 		5.6
(0.3)
A 		8
B 7
(0.4)
A 		6.3
(-0.1)
A 		1.8
(-3)
A 		2.2
(-2.7)
A 		5.6
(-0.5)
A 		11
(3)
A 		9
C 2.9
(-0.2)
A 		2.6
(-0.6)
A 		1
(-2.5)
A 		5.6
(3)
A 		4.2
(1.3)
A 		0.6
(-3)
A 		5
avr 3.8
(-2.7) 		4
(-2.1) 		3.7
(-3) 		5.6
(2.7) 		4.5
(-0.6) 		5.7
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182425_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17589
Sequence Type Exemplar sequence
Representative Public ID T04C10.3 NCBI
Target Description T04C10.3 /REP_DB=WormBase Gene ID /WP=CE06354 /TR=Q22154 /GB=CAA93755.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078056(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078056 NCBI Caenorhabditis elegans T04C10.3 (T04C10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000038434 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14812297:14814298:1 10/11 None
T04C10.3 ENSEMBL cdna:known chromosome:CEL140:X:14812279:14814298:1 gene:T04C10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038429 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14812278-14814298(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04C10.3
Entrez Gene 188056 Entrez gene
SwissProt Q22154 EMBL-EBI
WormBase CE06354 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93755 Hypothetical protein T04C10.3 [Caenorhabditis elegans] ref|NP_510457.1| T04C10.3 [Caenorhabditis elegans] 1.0E-158
blast CAA93755 Hypothetical protein T04C10.3 [Caenorhabditis elegans] ref|NP_510457.1| T04C10.3 [Caenorhabditis elegans] 7.0E-96
blast CAE63233 Hypothetical protein CBG07595 [Caenorhabditis briggsae] 2.0E-69
blast CAE63233 Hypothetical protein CBG07595 [Caenorhabditis briggsae] 6.0E-45
Sequence
Target Sequence 
>C. ELEGANS:182425_AT
aaaactgaactccttcatgctcatttgcaaaatttgcaagaacaagtggagtcattgcat
ggcatggaagaaattgataaaatggaagtgtcatggattacatttaaaaaaagttatgag
gatttcaaaaatgatgatctcggggtaaaaattcatttaaaaaactgttttcaaacctgc
aaagcatcatttgacgacaaccttgctgctgaaattcgacttattaggcaaaattttacg
gatttattgcaggatttctttcaaaaacggcgagttgagaaattgagacagctggttgaa
gagtttgatttagttctaatcacaatgggaaacatatattctcagctaaacgactcgatg
aaatcagatttggaagcttccaagaaacaaaaaactattttggacaagaaattgtcagat
cttttgcaaaaaaccactaaagttcaagtcaaactttgcgacgtcattaagcaggcgatt
cgacagcaagtttacaggcacgatgacctgtgttgcttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTGAACTCCTTCATGCTCATT 291 131 298 Antisense
CAAGTGGAGTCATTGCATGGCATGG 445 183 340 Antisense
ACTGTTTTCAAACCTGCAAAGCATC 319 97 461 Antisense
ATTTGACGACAACCTTGCTGCTGAA 287 17 486 Antisense
GCTGCTGAAATTCGACTTATTAGGC 161 297 502 Antisense
ATATTCTCAGCTAAACGACTCGATG 449 19 633 Antisense
GTTCAAGTCAAACTTTGCGACGTCA 186 445 739 Antisense
GCGACGTCATTAAGCAGGCGATTCG 31 291 755 Antisense
GCAGGCGATTCGACAGCAAGTTTAC 476 311 768 Antisense
GACAGCAAGTTTACAGGCACGATGA 429 367 779 Antisense
GGCACGATGACCTGTGTTGCTTGAC 550 535 794 Antisense
Sequence Source Affymetrix Proprietary Database