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[182424_at]

Description F56H1.5 /REP_DB=WormBase Gene ID /WP=CE17916 /TR=O76373 /GB=AAC19197.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 49      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 49      4grp_total > 21      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 159.3
(2.7)
P 		116.7
(-1.2)
A 		96.9
(-3)
P 		162.1
(3)
P 		65
B 145.3
(1.8)
P 		130.4
(0.7)
A 		77.3
(-3)
P 		162.7
(3)
P 		85
C 126.2
(0.2)
P 		128.7
(0.4)
P 		83.8
(-3)
P 		163.2
(3)
P 		79
avr 143.6
(1.5) 		125.3
(0.1) 		86
(-3) 		162.7
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 182.6
(3)
P 		116
(-0.5)
P 		68.7
(-3)
P 		120.8
(-0.3)
P 		142.2
(0.9)
P 		172.2
(2.5)
P 		114
B 160.4
(3)
P 		114.8
(-0.7)
P 		85.5
(-3)
P 		97.9
(-2)
P 		147.2
(1.9)
P 		149.5
(2.1)
P 		75
C 168.1
(2.5)
P 		141.5
(0.2)
P 		129.6
(-0.8)
P 		123.3
(-1.3)
P 		102.6
(-3)
P 		174.7
(3)
P 		72
avr 170.4
(3) 		124.1
(-0.7) 		94.6
(-3) 		114
(-1.5) 		130.7
(-0.1) 		165.5
(2.6) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 58
(3)
P 		25.3
(-2.7)
A 		25.3
(-2.7)
P 		23.7
(-3)
P 		34
B 46.3
(3)
P 		32.2
(0)
A 		17.9
(-3)
P 		34.7
(0.5)
P 		28
C 41.8
(3)
P 		37
(1)
P 		29.2
(-2.3)
P 		27.5
(-3)
P 		14
avr 48.7
(3) 		31.5
(-1.2) 		24.1
(-3) 		28.6
(-1.9) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 33.7
(1)
P 		41.3
(2.7)
P 		15
(-3)
P 		30.6
(0.4)
P 		42.9
(3)
P 		41.9
(2.8)
P 		28
B 55.8
(2.4)
P 		38.2
(-0.3)
P 		20.8
(-3)
P 		25.9
(-2.2)
P 		59.8
(3)
P 		55.7
(2.4)
P 		39
C 62.3
(3)
P 		43.2
(-0.1)
P 		33
(-1.7)
P 		24.8
(-3)
P 		33.2
(-1.7)
P 		58.5
(2.4)
P 		38
avr 50.6
(2.7) 		40.9
(0.7) 		22.9
(-3) 		27.1
(-2.1) 		45.3
(1.6) 		52
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182424_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.377
Sequence Type Exemplar sequence
Representative Public ID F56H1.5 NCBI
Target Description F56H1.5 /REP_DB=WormBase Gene ID /WP=CE17916 /TR=O76373 /GB=AAC19197.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059273 NCBI Caenorhabditis elegans F56H1.5 (F56H1.5) mRNA, complete cds. 11/11 None
F56H1.5 ENSEMBL cdna:known chromosome:CEL140:I:5762481:5770503:-1 gene:F56H1.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5762734-5770503(-) 98.16 100.0
Public Domain and Genome References
Gene Title
Ensembl F56H1.5
Entrez Gene 172241 Entrez gene
SwissProt O76373 EMBL-EBI
WormBase CE17916 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4182 carboxypeptidase A activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19197 Hypothetical protein F56H1.5 [Caenorhabditis elegans] ref|NP_491674.1| F56H1.5 [Caenorhabditis elegans] 0.0
blast CAE67388 Hypothetical protein CBG12873 [Caenorhabditis briggsae] 0.0
blast NP_001019616 ATP/GTP binding protein 1 [Danio rerio] gb|AAY42353.1| ATP/GTP binding protein 1 [Danio rerio] 2.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR000834 EMBL-EBI Peptidase M14, carboxypeptidase A 1.2E-82
Sequence
Target Sequence 
>C. ELEGANS:182424_AT
ggatcacatcgttgttctttagctggaattgatttaaatcgaatgtgggatcgaccgaat
gaagcactgcatcctgaagttttcgccacaaaagcgatcattcagtacttgtgcgaagta
gcaaacaaaaagccatttgcatacgtggatattcatggtcactcgaagaaatgggactat
ttcgtatatggaaacaatgcatctgaatcatggagagctgatgatgttctggatgttgga
gctgctcaattggaagaagaacttcatttggcattacctaaagcattggaagcgacttgc
ccaagtcgtttcaatgcatcagaatgccgtttcaacataactcgtgccaaagagtcatct
gcccgtgttaatgtttggcgtcaattcggagtctccacggcttacactttagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCACATCGTTGTTCTTTAGCTG 565 511 3061 Antisense
GGGATCGACCGAATGAAGCACTGCA 679 495 3107 Antisense
TGCATCCTGAAGTTTTCGCCACAAA 412 577 3128 Antisense
GATGTTCTGGATGTTGGAGCTGCTC 668 409 3283 Antisense
GAAGAACTTCATTTGGCATTACCTA 421 339 3316 Antisense
GCATTGGAAGCGACTTGCCCAAGTC 441 307 3343 Antisense
GCCCAAGTCGTTTCAATGCATCAGA 580 285 3359 Antisense
TGCCGTTTCAACATAACTCGTGCCA 306 583 3385 Antisense
AGAGTCATCTGCCCGTGTTAATGTT 625 67 3411 Antisense
TTTGGCGTCAATTCGGAGTCTCCAC 516 651 3434 Antisense
GTCTCCACGGCTTACACTTTAGAAT 295 471 3451 Antisense
Sequence Source Affymetrix Proprietary Database