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[182422_s_at]

Description ZK1128.8 /REP_DB=WormBase Gene ID /WP=CE23493 /TR=Q9XVX5 /GB=CAA87426.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 64      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 74      6grp_total > 64      4grp_total > 60      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 658.6
(-3)
P 		680.9
(-1.4)
P 		740
(3)
P 		719.4
(1.5)
P 		81
B 760.4
(2.2)
P 		664.7
(-1.2)
P 		782.9
(3)
P 		613.2
(-3)
P 		170
C 749.7
(1.7)
P 		773.6
(2.4)
P 		795.2
(3)
P 		580.5
(-3)
P 		215
avr 722.9
(0.8) 		706.4
(0.1) 		772.7
(3) 		637.7
(-3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 625.9
(-2.7)
P 		698.8
(-1)
P 		792.6
(1.3)
P 		864.1
(3)
P 		614.5
(-3)
P 		754.5
(0.4)
P 		250
B 699.4
(-0.7)
P 		641.5
(-3)
P 		791.7
(3)
P 		684.9
(-1.3)
P 		646.8
(-2.8)
P 		746.5
(1.2)
P 		150
C 834.4
(2.7)
P 		680.4
(-2.8)
P 		800.5
(1.5)
P 		673.4
(-3)
P 		803.4
(1.6)
P 		842.7
(3)
P 		169
avr 719.9
(-0.7) 		673.6
(-3) 		794.9
(3) 		740.8
(0.3) 		688.2
(-2.3) 		781.2
(2.3) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 239.8
(3)
P 		147.8
(-1.1)
P 		193.4
(0.9)
P 		105.3
(-3)
P 		135
B 242.5
(3)
P 		164.2
(-1.2)
P 		181.4
(-0.3)
P 		130.7
(-3)
P 		112
C 248.2
(2)
P 		222.4
(1.2)
P 		277.2
(3)
P 		97.9
(-3)
P 		179
avr 243.5
(3) 		178.1
(0) 		217.3
(1.8) 		111.3
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 115.4
(-3)
P 		248.5
(3)
P 		172.6
(-0.4)
P 		219.1
(1.7)
P 		185.4
(0.2)
P 		183.7
(0.1)
P 		133
B 243.4
(0.8)
P 		213.5
(-1)
P 		192.2
(-2.3)
P 		181.4
(-3)
P 		262.8
(2)
P 		278.4
(3)
P 		97
C 309.3
(3)
P 		207.6
(-0.5)
P 		203.7
(-0.6)
P 		135.4
(-3)
P 		260
(1.3)
P 		282.1
(2.1)
P 		174
avr 222.7
(0.8) 		223.2
(0.9) 		189.5
(-2.1) 		178.6
(-3) 		236.1
(2) 		248.1
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182422_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6288
Sequence Type Exemplar sequence
Representative Public ID ZK1128.8 NCBI
Target Description ZK1128.8 /REP_DB=WormBase Gene ID /WP=CE23493 /TR=Q9XVX5 /GB=CAA87426.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027817(11), NM_001027816(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027817 NCBI Caenorhabditis elegans ZK1128.8b (ZK1128.8) mRNA, complete cds. 11/11 None
NM_001027816 NCBI Caenorhabditis elegans ZK1128.8a (ZK1128.8) mRNA, complete cds. 11/11 None
SNAP00000023584 ENSEMBL cdna:SNAP chromosome:CEL140:III:10112114:10112757:-1 11/11 None
GENEFINDER00000023595 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10112114:10112757:-1 11/11 None
ZK1128.8b ENSEMBL cdna:known chromosome:CEL140:III:10111998:10112909:-1 gene:ZK1128.8 11/11 None
ZK1128.8a.1 ENSEMBL cdna:known chromosome:CEL140:III:10112025:10112938:-1 gene:ZK1128.8 11/11 None
ZK1128.8a.2 ENSEMBL cdna:known chromosome:CEL140:III:10112097:10112934:-1 gene:ZK1128.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10112109-10112753(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK1128.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD90185 Hypothetical protein ZK1128.8b [Caenorhabditis elegans] ref|NP_001022988.1| ZK1128.8b [Caenorhabditis elegans] 1.0E-107
blast CAA87426 Hypothetical protein ZK1128.8a [Caenorhabditis elegans] ref|NP_001022987.1| ZK1128.8a [Caenorhabditis elegans] 1.0E-104
blast CAD90185 Hypothetical protein ZK1128.8b [Caenorhabditis elegans] ref|NP_001022988.1| ZK1128.8b [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.2E-4
Sequence
Target Sequence 
>C. ELEGANS:182422_S_AT
gcaacatgttctgtgcaccggaaatttgtgctcacgagaaacttttgattatttgagaac
cttatcatcggacgtacacattgttcgaggagagttcgacgacgaaaccctcaagtatcc
ggacacaaaagtggtaacagtcggacaatttcgcattggagtttgccatggtcatcagat
tattccatggggagatcagagaatgctcgaactgctggcaagacaactcgatgtcgacat
tcttgtcactggaaacacctacgaatgcagtgctgtcgaaaagaatggccgattcttcgt
tgatccaggaagtgcgaccggctcattcagtgtcaccaaaacggaaccaacaaccccttc
atttgctcttctcgatgtccaagccgacaacgttgtcacttatttgtaccgtctgattga
cgacgctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACATGTTCTGTGCACCGGAAAT 639 319 15 Antisense
GAGAACCTTATCATCGGACGTACAC 349 391 69 Antisense
GACGAAACCCTCAAGTATCCGGACA 489 377 115 Antisense
GGAGTTTGCCATGGTCATCAGATTA 11 519 172 Antisense
TCGATGTCGACATTCTTGTCACTGG 25 603 242 Antisense
AACACCTACGAATGCAGTGCTGTCG 286 135 268 Antisense
TTGATCCAGGAAGTGCGACCGGCTC 39 703 314 Antisense
CCGGCTCATTCAGTGTCACCAAAAC 71 267 332 Antisense
TCTTCTCGATGTCCAAGCCGACAAC 550 617 381 Antisense
CGTTGTCACTTATTTGTACCGTCTG 663 247 405 Antisense
GTACCGTCTGATTGACGACGCTGTC 33 459 420 Antisense
Sequence Source Affymetrix Proprietary Database