[Home] | [Total List]

[182421_at]

Description R12B2.4 /REP_DB=WormBase Gene ID /WP=CE01367 /TR=Q21952 /GB=AAA50742.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 87      6grp_total > 87      4grp_total > 60      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 191
(-2.1)
A 		278
(3)
A 		207.8
(-1.1)
P 		176
(-3)
A 		102
B 255.4
(3)
P 		233.6
(1.6)
A 		227.4
(1.2)
A 		161.8
(-3)
A 		94
C 266.7
(2.3)
P 		185.5
(-1)
A 		283.2
(3)
M 		134.8
(-3)
A 		148
avr 237.7
(2.9) 		232.4
(2.5) 		239.5
(3) 		157.5
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 580
1 2 3 4 5 6 range
A 255.9
(-2.4)
A 		212.9
(-3)
P 		220
(-2.9)
P 		297.2
(-1.7)
P 		381.6
(-0.5)
P 		611.2
(3)
P 		398
B 310.3
(-1.4)
P 		187.6
(-3)
P 		219.8
(-2.6)
M 		239.7
(-2.3)
P 		483.3
(0.9)
P 		643.1
(3)
P 		456
C 228.9
(-3)
P 		227.2
(-3)
M 		247.8
(-2.8)
A 		482.8
(-0.2)
P 		398.1
(-1.1)
P 		767.5
(3)
P 		540
avr 265
(-2.3) 		209.2
(-3) 		229.2
(-2.7) 		339.9
(-1.3) 		421
(-0.3) 		673.9
(3) 		465
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 69.5
(3)
A 		60.4
(1.8)
A 		54.3
(0.9)
P 		25.8
(-3)
A 		44
B 81.4
(3)
P 		57.7
(-0)
A 		52.7
(-0.7)
A 		34.5
(-3)
A 		47
C 88.3
(2.2)
P 		53.3
(-0.6)
A 		98.7
(3)
M 		22.7
(-3)
A 		76
avr 79.7
(3) 		57.1
(0.4) 		68.6
(1.7) 		27.7
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 210
1 2 3 4 5 6 range
A 47.2
(-3)
A 		75.7
(-1.3)
P 		47.9
(-3)
P 		75.4
(-1.3)
P 		115.1
(1)
P 		148.8
(3)
P 		102
B 108
(-1.2)
P 		62.4
(-2.7)
P 		53.4
(-3)
M 		63.5
(-2.7)
P 		196.4
(1.6)
P 		239.8
(3)
P 		186
C 84.8
(-2.3)
P 		69.3
(-2.8)
M 		63.1
(-3)
A 		97.1
(-1.9)
P 		128.8
(-1)
P 		256.9
(3)
P 		194
avr 80
(-2.1) 		69.1
(-2.5) 		54.8
(-3) 		78.7
(-2.1) 		146.8
(0.4) 		215.2
(3) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182421_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6471
Sequence Type Exemplar sequence
Representative Public ID R12B2.4 NCBI
Target Description R12B2.4 /REP_DB=WormBase Gene ID /WP=CE01367 /TR=Q21952 /GB=AAA50742.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065852 NCBI Caenorhabditis elegans High Incidence of Males (increased X chromosome loss) family member (him-10) (him-10) mRNA, complete cds. 11/11 None
SNAP00000015241 ENSEMBL cdna:SNAP chromosome:CEL140:III:5803214:5804943:1 11/11 None
GENEFINDER00000015246 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5803214:5804943:1 11/11 None
R12B2.4.1 ENSEMBL cdna:known chromosome:CEL140:III:5803207:5805030:1 gene:R12B2.4 11/11 None
R12B2.4.2 ENSEMBL cdna:known chromosome:CEL140:III:5803209:5804992:1 gene:R12B2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5803212-5804942(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol him-10
Ensembl R12B2.4
Entrez Gene 175813 Entrez gene
SwissProt Q21952 EMBL-EBI
WormBase CE01367 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
776 kinetochore inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50742 High incidence of males (increased x chromosome loss) protein 10 [Caenorhabditis elegans] ref|NP_498253.1| High Incidence of Males (increased X chromosome loss) family member (him-10) [Caenorhabditis elegans] 0.0
blast CAE64397 Hypothetical protein CBG09087 [Caenorhabditis briggsae] 1.0E-135
Sequence
Target Sequence 
>C. ELEGANS:182421_AT
ggagaagaacgtgccagtgattattgagaagatccatcagtggactgaagttcgagaagt
tatcattgacctgatcgatgttgaaagtgagaatcttcgaaagctcaaggaaatggagga
gcaattggattttatgatgaaggagatggaaacggcacaaaagcgactcgtcgagcagtc
ggagactcatgaacaattgcgtatagaacacacgcagaaaagtgaagagcgtcagcgtag
aattgaggagattaccgagcaaatcgcaaatttgaaaactagtcagccagatgtgtcaca
ggaaattgctaaaaagaagcaagaactcctcgctctaaaaaacgcacacagtgagacgat
ttcccaaatcaccaactcttgccaagatgctgttgcaaaattcgcaaaacttaatgcaat
gttcaaagaaacccagaaagtagcttttgagaagaacactgcagctgcacgtgaaatgga
acgtctaaaaagctctcttaccggacgccttctgagtgattacacattcggatcatcgac
aatcgacgccgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAAGAACGTGCCAGTGATTATT 528 517 873 Antisense
GACTCGTCGAGCAGTCGGAGACTCA 222 375 1037 Antisense
AACTAGTCAGCCAGATGTGTCACAG 290 139 1149 Antisense
AAGAAGCAAGAACTCCTCGCTCTAA 278 153 1186 Antisense
TCCTCGCTCTAAAAAACGCACACAG 694 591 1199 Antisense
GCACACAGTGAGACGATTTCCCAAA 495 317 1216 Antisense
CCAAATCACCAACTCTTGCCAAGAT 82 275 1236 Antisense
GAAGAACACTGCAGCTGCACGTGAA 155 341 1323 Antisense
TCTAAAAAGCTCTCTTACCGGACGC 593 259 1356 Antisense
GGACGCCTTCTGAGTGATTACACAT 382 523 1375 Antisense
CGGATCATCGACAATCGACGCCGGA 238 241 1401 Antisense
Sequence Source Affymetrix Proprietary Database