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[182420_at]

Description F14F11.2 /REP_DB=WormBase Gene ID /WP=CE03210 /TR=Q19465 /GB=CAA91093.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 02      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 76      6grp_total > 07      4grp_total > 22      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2400
1 2 3 4 range
A 2525.2
(3)
P 		560.6
(-2.6)
P 		433.4
(-3)
P 		2020.6
(1.6)
P 		2092
B 1891
(0.6)
P 		749.2
(-2.3)
P 		493
(-3)
P 		2833.2
(3)
P 		2340
C 2570.1
(3)
P 		996.2
(-1.5)
P 		453.6
(-3)
P 		2193.2
(1.9)
P 		2117
avr 2328.8
(2.9) 		768.7
(-2) 		460
(-3) 		2349
(3) 		1889

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 899
1 2 3 4 5 6 range
A 1391.9
(3)
P 		1007.8
(-2.1)
P 		1380.9
(2.9)
P 		1148.9
(-0.2)
P 		1040.3
(-1.6)
P 		938.2
(-3)
P 		454
B 1770.4
(3)
P 		1353
(-0.7)
P 		1400.7
(-0.3)
P 		1199.3
(-2)
P 		1087.9
(-3)
P 		1151.3
(-2.4)
P 		683
C 1432.8
(3)
P 		1314.8
(1.7)
P 		1072.4
(-0.8)
P 		1270.4
(1.3)
P 		871
(-3)
P 		1188
(0.4)
P 		562
avr 1531.7
(3) 		1225.2
(-0.5) 		1284.7
(0.2) 		1206.2
(-0.7) 		999.7
(-3) 		1092.5
(-2) 		532
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 806
1 2 3 4 range
A 919.4
(3)
P 		121.7
(-2.9)
P 		113.3
(-3)
P 		295.8
(-1.6)
P 		806
B 603
(3)
P 		185
(-2.1)
P 		114.2
(-3)
P 		603.8
(3)
P 		490
C 850.8
(3)
P 		286.4
(-1.9)
P 		158.1
(-3)
P 		369.8
(-1.2)
P 		693
avr 791.1
(3) 		197.7
(-2.4) 		128.5
(-3) 		423.1
(-0.3) 		663

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 388
1 2 3 4 5 6 range
A 256.6
(-1.7)
P 		358.4
(3)
P 		300.7
(0.3)
P 		291.4
(-0.1)
P 		313.9
(0.9)
P 		228.4
(-3)
P 		130
B 616
(3)
P 		450.4
(-0.3)
P 		340.1
(-2.5)
P 		317.6
(-3)
P 		442
(-0.5)
P 		429.3
(-0.8)
P 		298
C 531.1
(3)
P 		401.2
(0.2)
P 		272.9
(-2.6)
P 		255.5
(-3)
P 		281.9
(-2.4)
P 		397.7
(0.1)
P 		276
avr 467.9
(3) 		403.3
(0.8) 		304.6
(-2.5) 		288.2
(-3) 		345.9
(-1.1) 		351.8
(-0.9) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182420_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3922
Sequence Type Exemplar sequence
Representative Public ID F14F11.2 NCBI
Target Description F14F11.2 /REP_DB=WormBase Gene ID /WP=CE03210 /TR=Q19465 /GB=CAA91093.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063350 NCBI Caenorhabditis elegans F14F11.2 (F14F11.2) mRNA, complete cds. 11/11 None
SNAP00000016420 ENSEMBL cdna:SNAP chromosome:CEL140:II:8294986:8295275:-1 11/11 None
GENEFINDER00000016424 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8294986:8295159:-1 9/11 None
F14F11.2 ENSEMBL cdna:known chromosome:CEL140:II:8294760:8295319:-1 gene:F14F11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8294982-8295272(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14F11.2
Entrez Gene 184487 Entrez gene
SwissProt Q19465 EMBL-EBI
WormBase CE03210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91093 Hypothetical protein F14F11.2 [Caenorhabditis elegans] ref|NP_495751.1| F14F11.2 [Caenorhabditis elegans] 3.0E-38
blast CAE57686 Hypothetical protein CBG00684 [Caenorhabditis briggsae] 3.0E-35
blast CAA91093 Hypothetical protein F14F11.2 [Caenorhabditis elegans] ref|NP_495751.1| F14F11.2 [Caenorhabditis elegans] 4.0E-27
blast CAE57686 Hypothetical protein CBG00684 [Caenorhabditis briggsae] 3.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495751.1 1 7-29
F14F11.2 1 7-29
SNAP00000016420 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:182420_AT
tgagctgcatctcgatgctcttcatcctgctcgtcgcttgtcttcttgtttcaaatgcaa
tgtatataaatccagactattattatgttgagcagttaccaacaatgaagaaatcaggtc
agcttcgggcattggctggctcacggaattgtttcttttcgcctgttaactgcatcatca
cccatgacatcaactcatatcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCTGCATCTCGATGCTCTTCAT 463 569 14 Antisense
ATGCAATGTATATAAATCCAGACTA 365 43 68 Antisense
ATCCAGACTATTATTATGTTGAGCA 644 39 83 Antisense
AAGAAATCAGGTCAGCTTCGGGCAT 594 151 121 Antisense
TCAGCTTCGGGCATTGGCTGGCTCA 433 623 132 Antisense
CATTGGCTGGCTCACGGAATTGTTT 227 217 143 Antisense
CACGGAATTGTTTCTTTTCGCCTGT 698 197 155 Antisense
TGTTTCTTTTCGCCTGTTAACTGCA 264 559 163 Antisense
TTTTCGCCTGTTAACTGCATCATCA 598 677 169 Antisense
TAACTGCATCATCACCCATGACATC 81 639 180 Antisense
CACCCATGACATCAACTCATATCGC 253 201 192 Antisense
Sequence Source Affymetrix Proprietary Database