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[182418_s_at]

Description F11C1.5B /REP_DB=WormBase Gene ID /WP=CE20667 /TR=Q19346 /GB=CAA91031.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 55      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 90      6grp_total > 56      4grp_total > 15      6grp_highest_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 281.5
(2.1)
P 		176.1
(-2.1)
P 		153.2
(-3)
P 		303.1
(3)
P 		150
B 373
(2.9)
P 		173.4
(-3)
P 		198.2
(-2.3)
P 		377.6
(3)
P 		204
C 369.9
(3)
P 		103.8
(-3)
P 		227
(-0.2)
P 		284.9
(1.1)
P 		266
avr 341.5
(3) 		151.1
(-3) 		192.8
(-1.7) 		321.9
(2.4) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 139.8
(-2)
P 		276
(3)
P 		170
(-0.9)
P 		190.7
(-0.1)
P 		113.5
(-3)
P 		245.2
(1.9)
P 		163
B 173.1
(-0.5)
P 		154
(-1.6)
P 		176.4
(-0.3)
P 		136.4
(-2.6)
P 		129.7
(-3)
P 		234.4
(3)
P 		105
C 261.2
(3)
P 		173.2
(-0.4)
P 		230.7
(1.8)
P 		104.8
(-3)
P 		103.6
(-3)
P 		238.8
(2.1)
P 		158
avr 191.4
(0.7) 		201.1
(1.1) 		192.4
(0.7) 		144
(-1.6) 		115.6
(-3) 		239.5
(3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 102.5
(3)
P 		38.2
(-3)
P 		40
(-2.8)
P 		44.4
(-2.4)
P 		64
B 119
(3)
P 		42.8
(-3)
P 		45.9
(-2.8)
P 		80.5
(-0)
P 		76
C 122.5
(3)
P 		29.9
(-3)
P 		79.1
(0.2)
P 		48
(-1.8)
P 		93
avr 114.7
(3) 		37
(-3) 		55
(-1.6) 		57.6
(-1.4) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 25.8
(-3)
P 		98.2
(3)
P 		37
(-2.1)
P 		48.4
(-1.1)
P 		34.3
(-2.3)
P 		59.7
(-0.2)
P 		72
B 60.2
(-0.2)
P 		51.3
(-1.2)
P 		42.8
(-2.2)
P 		36.1
(-3)
P 		52.7
(-1.1)
P 		87.4
(3)
P 		51
C 96.8
(3)
P 		52.8
(-0.5)
P 		58.7
(-0)
P 		21.1
(-3)
P 		33.5
(-2)
P 		80
(1.7)
P 		76
avr 60.9
(0.8) 		67.4
(1.8) 		46.2
(-1.4) 		35.2
(-3) 		40.2
(-2.3) 		75.7
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182418_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17863
Sequence Type Exemplar sequence
Representative Public ID F11C1.5B NCBI
Target Description F11C1.5B /REP_DB=WormBase Gene ID /WP=CE20667 /TR=Q19346 /GB=CAA91031.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077760(11), NM_077759(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077760 NCBI Caenorhabditis elegans F11C1.5b (F11C1.5) mRNA, complete cds. 11/11 None
NM_077759 NCBI Caenorhabditis elegans F11C1.5a (F11C1.5) mRNA, complete cds. 11/11 A 
GENEFINDER00000035049 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12989413:12999491:1 11/11 None
SNAP00000035044 ENSEMBL cdna:SNAP chromosome:CEL140:X:12995729:12999491:1 11/11 None
F11C1.5b ENSEMBL cdna:known chromosome:CEL140:X:12991366:12997947:1 gene:F11C1.5 11/11 None
F11C1.5a ENSEMBL cdna:known chromosome:CEL140:X:12991418:12999548:1 gene:F11C1.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12991417-12997821(+) 100.0 100.0
Public Domain and Genome References
Ensembl F11C1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91031 Hypothetical protein F11C1.5b [Caenorhabditis elegans] ref|NP_510161.1| F11C1.5b [Caenorhabditis elegans] 0.0
blast CAA91030 Hypothetical protein F11C1.5a [Caenorhabditis elegans] ref|NP_510160.1| F11C1.5a [Caenorhabditis elegans] 0.0
blast CAE70359 Hypothetical protein CBG16916 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:182418_S_AT
atcatcagcttgcccgacaaaatggcggctgttgttacaaagcaaacgagtttgggtgaa
acgcttggagctatgtttaccggttccaattattcatggagattatcaaatcaacaaagc
aatcacgctttgctttatgagtgtggagggcgcgaaatgctggtgtataccgatgaaaaa
cacggagtcactgtccagaacggcacggtaccgtttaacatcaaacgagtatttgcttca
gctcctcaacaatggactgtagtttcaatggaaaatgagaactatcttctgaaggtggaa
ctcggaaattttactttggagaaaattgacaacgatttggaaggcggcctagatacggtt
gcaacaaagttggacaagaatgcaatgactttagttgccgagccatactactttgttcaa
ggaaaccattctggaagtgtttccggcgtactccgaaagaaatctgaaaatacgtttcat
aaacggccgtatagctttactgacgatagaattgctgcaaatgatgtgagcagggaaaat
gcatttttgggcagtacattggttcgtgcagtacctgggttcatgactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCATCAGCTTGCCCGACAAAATGG 36 31 3301 Antisense
GGGCGCGAAATGCTGGTGTATACCG 164 493 3448 Antisense
TCACTGTCCAGAACGGCACGGTACC 265 625 3488 Antisense
AACGAGTATTTGCTTCAGCTCCTCA 505 143 3524 Antisense
GACAACGATTTGGAAGGCGGCCTAG 428 365 3628 Antisense
GGCGGCCTAGATACGGTTGCAACAA 21 541 3643 Antisense
CAATGACTTTAGTTGCCGAGCCATA 309 183 3683 Antisense
TGCCGAGCCATACTACTTTGTTCAA 692 583 3696 Antisense
CGGCCGTATAGCTTTACTGACGATA 414 239 3784 Antisense
GGGCAGTACATTGGTTCGTGCAGTA 300 489 3849 Antisense
GTGCAGTACCTGGGTTCATGACTCC 461 479 3866 Antisense
Sequence Source Affymetrix Proprietary Database