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[182417_at]

Description Y75B8A.7 /REP_DB=WormBase Gene ID /WP=CE23019 /TR=Q9XW58 /GB=CAA22114.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 60      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 33.9
(-1)
M 		60
(3)
A 		30.9
(-1.4)
A 		20.6
(-3)
A 		39
B 47.2
(-1.8)
A 		42.4
(-2.7)
A 		70.8
(3)
A 		41
(-3)
A 		30
C 73
(3)
P 		60.2
(1.8)
A 		71.1
(2.8)
A 		8.1
(-3)
A 		65
avr 51.4
(1.9) 		54.2
(2.4) 		57.6
(3) 		23.2
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 97.5
(3)
P 		16.9
(-3)
A 		45
(-0.9)
A 		44.6
(-0.9)
A 		52
(-0.4)
A 		35.2
(-1.6)
A 		81
B 45.2
(1.7)
M 		56.7
(3)
A 		2.1
(-3)
A 		4.8
(-2.7)
A 		20.5
(-1)
A 		36.2
(0.7)
A 		55
C 41
(1.2)
A 		25.5
(-0.6)
A 		31.1
(0)
A 		5.6
(-3)
A 		33.7
(0.3)
A 		56.1
(3)
A 		51
avr 61.2
(3) 		33
(-0.9) 		26.1
(-1.9) 		18.3
(-3) 		35.4
(-0.6) 		42.5
(0.4) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 12.3
(2.6)
M 		13
(3)
A 		8.1
(0.1)
A 		3
(-3)
A 		10
B 15.1
(2)
A 		10.5
(-1.6)
A 		16.4
(3)
A 		8.7
(-3)
A 		8
C 24.2
(2.8)
P 		17.3
(1.1)
A 		24.8
(3)
A 		1.4
(-3)
A 		23
avr 17.2
(3) 		13.6
(1.3) 		16.4
(2.6) 		4.4
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 18
(3)
P 		6
(-3)
A 		9.8
(-1.1)
A 		11.3
(-0.4)
A 		15.7
(1.9)
A 		8.6
(-1.7)
A 		12
B 15.7
(2)
M 		18.9
(3)
A 		0.5
(-3)
A 		1.3
(-2.7)
A 		8.3
(-0.5)
A 		13.5
(1.2)
A 		18
C 15.2
(1.8)
A 		7.8
(-0.7)
A 		7.9
(-0.7)
A 		1.1
(-3)
A 		10.9
(0.3)
A 		18.8
(3)
A 		18
avr 16.3
(3) 		10.9
(0.2) 		6.1
(-2.2) 		4.6
(-3) 		11.6
(0.6) 		13.6
(1.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182417_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6964
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.7 NCBI
Target Description Y75B8A.7 /REP_DB=WormBase Gene ID /WP=CE23019 /TR=Q9XW58 /GB=CAA22114.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067179(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067179 NCBI Caenorhabditis elegans Y75B8A.7 (Y75B8A.7) mRNA, complete cds. 11/11 None
GENEFINDER00000020201 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12156959:12159472:1 11/11 None
SNAP00000020074 ENSEMBL cdna:SNAP chromosome:CEL140:III:12158840:12159472:1 11/11 None
Y75B8A.7 ENSEMBL cdna:known chromosome:CEL140:III:12152774:12159507:1 gene:Y75B8A.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12152785-12159468(+) 97.28 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.7
Entrez Gene 176646 Entrez gene
SwissProt Q9XW58 EMBL-EBI
WormBase CE23019 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247046_AT expressed protein at
CANINE_2:CFAAFFX.16213.1.S1_S_AT similar to M-phase phosphoprotein 10 cfa
DROSOPHILA_2:1626818_AT dm
DROSGENOME1:146039_AT dm
CHICKEN:GGA.9219.1.S1_AT similar to M-phase phosphoprotein 10 gga
CHICKEN:GGAAFFX.26050.1.S1_S_AT similar to M-phase phosphoprotein 10 gga
HU35KSUBA:X98494_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) hs
HU35KSUBD:RC_H88801_S_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) hs
U133_X3P:HS.201676.0.S1_3P_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) hs
HG-U133A_2:212885_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) hs
HG-U133_PLUS_2:212885_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) hs
HG-U133A:212885_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) hs
HG-U95AV2:33797_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) hs
MU11KSUBA:AA590060_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) mm
MG-U74AV2:104022_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) mm
MG-U74BV2:108461_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) mm
MOE430A:1429080_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) mm
MOUSE430A_2:1429080_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) mm
MOUSE430_2:1429080_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) mm
MOE430A:1431388_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) mm
MOUSE430A_2:1431388_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) mm
MOUSE430_2:1431388_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) mm
MU19KSUBA:TC21594_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein), mRNA (cDNA clone IMAGE:4504841) mm
RG-U34C:RC_AI177638_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) (predicted) rn
RAE230A:1375442_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) (predicted) rn
RAT230_2:1375442_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) (predicted) rn
RAE230B:1382161_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) (predicted) rn
RAT230_2:1382161_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) (predicted) rn
RG-U34C:RC_AI137651_AT M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) (predicted) rn
YEAST_2:1772172_AT Component of the SSU processome, which is required for pre-18S rRNA processing, interacts with and controls the stability of Imp3p and Imp4p, essential for viability; similar to human Mpp10p Sc
Protein Similarities
Method ID Description E-Value
blast CAA22114 Hypothetical protein Y75B8A.7 [Caenorhabditis elegans] ref|NP_499580.1| Y75B8A.7 [Caenorhabditis elegans] 0.0
blast CAE75094 Hypothetical protein CBG23016 [Caenorhabditis briggsae] 0.0
blast CAA22114 Hypothetical protein Y75B8A.7 [Caenorhabditis elegans] ref|NP_499580.1| Y75B8A.7 [Caenorhabditis elegans] 1.0E-146
blast CAE75094 Hypothetical protein CBG23016 [Caenorhabditis briggsae] 1.0E-121
blast CAA22114 Hypothetical protein Y75B8A.7 [Caenorhabditis elegans] ref|NP_499580.1| Y75B8A.7 [Caenorhabditis elegans] 2.0E-77
blast CAE75094 Hypothetical protein CBG23016 [Caenorhabditis briggsae] 7.0E-59
blast AAH49270 M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein) [Mus musculus] sp|Q810V0|MPP10_MOUSE U3 small nucleolar ribonucleoprotein protein MPP10 (M phase phosphoprotein 10) 4.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR007151 EMBL-EBI Mpp10 protein 1.0E-126
Pfam IPR007151 EMBL-EBI Mpp10 protein 6.8E-100
Pfam IPR007151 EMBL-EBI Mpp10 protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182417_AT
cagcaggagccacgaagccgaatgaagctcatgaagctataaaatcgaagatgggagatc
tcttccggctaattgatgcgctaactcatttcgagtataaaccggatcaagctcgcgagg
aggtgaaagtggtctcaaatatggctgctctacgtgtggaagaagtcggaattacagctt
caacggaggctcagcttatggctccagaggagatttcgaagaagatgaaggcgattgaaa
agagcaaggatgagagagacgcgactgataaggcacgagaacgtcggcagaagaaggcta
agcagaggtcgatgctggaaaagtttggcgaggagcgagttttcggagagcagaaggcgg
tgaagctggccaagaaggagaggaaggctgggaaggagaagggcggcggggtggataaga
ttaagagctcgaacttctttgcgaagcttcaggagacggtggctgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGCAGGAGCCACGAAGCCGAATGA 7 205 1403 Antisense
GATCTCTTCCGGCTAATTGATGCGC 70 419 1459 Antisense
ATTGATGCGCTAACTCATTTCGAGT 589 3 1474 Antisense
TAAACCGGATCAAGCTCGCGAGGAG 426 639 1500 Antisense
GTGGTCTCAAATATGGCTGCTCTAC 443 489 1531 Antisense
GGCTGCTCTACGTGTGGAAGAAGTC 684 539 1545 Antisense
GAATTACAGCTTCAACGGAGGCTCA 21 323 1571 Antisense
CGGAGGCTCAGCTTATGGCTCCAGA 657 243 1586 Antisense
GAGACGCGACTGATAAGGCACGAGA 677 393 1658 Antisense
GAGCTCGAACTTCTTTGCGAAGCTT 378 387 1827 Antisense
GAAGCTTCAGGAGACGGTGGCTGCT 519 341 1845 Antisense
Sequence Source Affymetrix Proprietary Database