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[182415_s_at]

Description F48E3.4 /REP_DB=WormBase Gene ID /WP=CE28402 /TR=Q9GPA1 /GB=AAF99955.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 50.8
(-2.3)
A 		32.7
(-3)
A 		47.3
(-2.4)
A 		191.4
(3)
P 		159
B 64.7
(1.3)
A 		13.2
(-2.7)
A 		9
(-3)
A 		86.5
(3)
P 		78
C 28.5
(-2.2)
A 		6.6
(-3)
A 		34.7
(-2)
A 		167.9
(3)
P 		161
avr 48
(-1.6) 		17.5
(-3) 		30.3
(-2.4) 		148.6
(3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 821
1 2 3 4 5 6 range
A 65
(-2.7)
A 		33.8
(-3)
A 		91.8
(-2.5)
P 		56
(-2.8)
A 		721.2
(2.9)
P 		731.4
(3)
P 		698
B 36.2
(-3)
A 		52.8
(-2.9)
A 		39.5
(-3)
A 		83.7
(-2.6)
A 		776.9
(2.9)
P 		788.9
(3)
P 		753
C 37.7
(-3)
A 		72.9
(-2.7)
A 		65.8
(-2.8)
A 		67
(-2.8)
A 		812.1
(2.7)
P 		855
(3)
P 		817
avr 46.3
(-3) 		53.2
(-2.9) 		65.7
(-2.8) 		68.9
(-2.8) 		770.1
(2.8) 		791.8
(3) 		746
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 18.5
(0.3)
A 		7.1
(-3)
A 		12.4
(-1.5)
A 		28
(3)
P 		21
B 20.6
(3)
A 		3.3
(-2.6)
A 		2.1
(-3)
A 		18.4
(2.3)
P 		19
C 9.4
(-1.3)
A 		1.9
(-3)
A 		12.1
(-0.7)
A 		28.3
(3)
P 		26
avr 16.2
(0.5) 		4.1
(-3) 		8.9
(-1.6) 		24.9
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 12
(-3)
A 		12
(-3)
A 		20
(-2.8)
P 		14.2
(-2.9)
A 		217.6
(3)
P 		178.1
(1.8)
P 		206
B 12.6
(-2.9)
A 		17.6
(-2.8)
A 		9.6
(-3)
A 		22.2
(-2.8)
A 		315.6
(3)
P 		294.2
(2.6)
P 		306
C 14
(-3)
A 		22.2
(-2.8)
A 		16.7
(-2.9)
A 		13.5
(-3)
A 		262.8
(2.5)
P 		286.2
(3)
P 		273
avr 12.9
(-3) 		17.3
(-2.9) 		15.4
(-2.9) 		16.6
(-2.9) 		265.3
(3) 		252.8
(2.7) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182415_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17146
Sequence Type Exemplar sequence
Representative Public ID F48E3.4 NCBI
Target Description F48E3.4 /REP_DB=WormBase Gene ID /WP=CE28402 /TR=Q9GPA1 /GB=AAF99955.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076866 NCBI Caenorhabditis elegans F48E3.4 (F48E3.4) mRNA, complete cds. 11/11 None
SNAP00000040271 ENSEMBL cdna:SNAP chromosome:CEL140:X:7493879:7495509:-1 11/11 None
GENEFINDER00000040280 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7493879:7495509:-1 11/11 None
F48E3.4 ENSEMBL cdna:known chromosome:CEL140:X:7493740:7495528:-1 gene:F48E3.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7493877-7495437(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48E3.4
Entrez Gene 181006 Entrez gene
SwissProt Q9GPA1 EMBL-EBI
WormBase CE35547 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99955 Hypothetical protein F48E3.4 [Caenorhabditis elegans] ref|NP_509267.2| F48E3.4 [Caenorhabditis elegans] 1.0E-143
blast T16403 hypothetical protein F48E3.4 - Caenorhabditis elegans 1.0E-121
blast CAE70222 Hypothetical protein CBG16702 [Caenorhabditis briggsae] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:182415_S_AT
aagaaggattcctctgctaccatgaacaaagcaatgcttgctgtgaaaattgacggcgac
ttggctctgatgaaaatcgatgcgttttgcgataaggagccacacccaccaagagttgca
cggctcaacttcaaaccaagcttgactgatgctacttaccgtacaattgtgccaagggat
cttcaagattccaaatgtagagtgattggatttgaaactacggaagatgtggaagacttc
gctacttcacacaaagtccaagtattggatcttgatgttcacgctgacacagaaaatctc
atgttctcagaagttaacagtaactctacaggtcgtgtttgctgggatgatataggagca
ccactggaatgtgttctggatgtagaaaacaataaatatgttcaagtaggaattgtttct
ggtctctacgggcgtgagatggacaaggaagacaacagcacaatggtggttgtcaactgc
tcagaagttcagaccatgcaatttgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAGGATTCCTCTGCTACCATGA 469 151 163 Antisense
TTGACGGCGACTTGGCTCTGATGAA 153 699 212 Antisense
TTTTGCGATAAGGAGCCACACCCAC 161 677 247 Antisense
GAGTTGCACGGCTCAACTTCAAACC 588 397 275 Antisense
GCTTGACTGATGCTACTTACCGTAC 213 305 302 Antisense
GTGGAAGACTTCGCTACTTCACACA 686 489 391 Antisense
GTAACTCTACAGGTCGTGTTTGCTG 312 461 482 Antisense
GGAGCACCACTGGAATGTGTTCTGG 304 521 517 Antisense
TAGGAATTGTTTCTGGTCTCTACGG 668 653 569 Antisense
GGTGGTTGTCAACTGCTCAGAAGTT 474 499 627 Antisense
GAAGTTCAGACCATGCAATTTGTTG 350 337 646 Antisense
Sequence Source Affymetrix Proprietary Database