[Home] | [Total List]

[182413_at]

Description R13A1.8 /REP_DB=WormBase Gene ID /WP=CE04843 /TR=Q21978 /GB=AAA81477.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 08      6grp_total > 04      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 217.2
(0.4)
P 		72.3
(-3)
A 		118.6
(-1.9)
A 		325.5
(3)
P 		253
B 236
(2.4)
P 		167.5
(-1.3)
M 		135.3
(-3)
A 		247.7
(3)
P 		112
C 224.4
(0.8)
P 		157.6
(-0.8)
A 		69.5
(-3)
A 		312
(3)
P 		243
avr 225.9
(0.8) 		132.5
(-2.2) 		107.8
(-3) 		295.1
(3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 196
1 2 3 4 5 6 range
A 324.8
(3)
P 		190
(-1.5)
P 		145.7
(-3)
P 		158.1
(-2.6)
A 		223
(-0.4)
P 		153.5
(-2.7)
P 		179
B 215.1
(3)
P 		186.1
(0.7)
P 		152.4
(-2)
P 		197.3
(1.6)
P 		139.8
(-3)
P 		146.3
(-2.5)
P 		75
C 154.5
(-0.8)
P 		192.8
(2.6)
P 		197.8
(3)
P 		195.8
(2.8)
P 		155.6
(-0.7)
P 		128.6
(-3)
P 		69
avr 231.5
(3) 		189.6
(0.2) 		165.3
(-1.5) 		183.7
(-0.2) 		172.8
(-1) 		142.8
(-3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 79.1
(3)
P 		15.7
(-3)
A 		31
(-1.6)
A 		47.7
(0)
P 		63
B 75.3
(3)
P 		41.4
(-1.6)
M 		31.4
(-3)
A 		52.8
(-0.1)
P 		44
C 74.3
(3)
P 		45.3
(-0.5)
A 		24.2
(-3)
A 		52.6
(0.4)
P 		50
avr 76.2
(3) 		34.1
(-2.3) 		28.9
(-3) 		51
(-0.2) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 59.9
(1.7)
P 		67.6
(3)
P 		31.7
(-3)
P 		40.1
(-1.6)
A 		67.3
(2.9)
P 		37.4
(-2)
P 		36
B 74.8
(3)
P 		62
(1)
P 		37
(-3)
P 		52.2
(-0.6)
P 		56.8
(0.1)
P 		54.5
(-0.2)
P 		38
C 57.3
(2.5)
P 		58.8
(3)
P 		50.3
(0.4)
P 		39.4
(-3)
P 		50.3
(0.4)
P 		43
(-1.9)
P 		19
avr 64
(3) 		62.8
(2.7) 		39.7
(-3) 		43.9
(-2) 		58.1
(1.5) 		45
(-1.7) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182413_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8531
Sequence Type Exemplar sequence
Representative Public ID R13A1.8 NCBI
Target Description R13A1.8 /REP_DB=WormBase Gene ID /WP=CE04843 /TR=Q21978 /GB=AAA81477.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068741 NCBI Caenorhabditis elegans R13A1.8 (R13A1.8) mRNA, complete cds. 11/11 None
SNAP00000003736 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7218076:7219468:-1 11/11 None
GENEFINDER00000003743 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7218076:7219468:-1 11/11 None
R13A1.8 ENSEMBL cdna:known chromosome:CEL140:IV:7218076:7219468:-1 gene:R13A1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7218081-7219474(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13A1.8
Entrez Gene 187853 Entrez gene
SwissProt Q21978 EMBL-EBI
WormBase CE04843 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15671 oxygen transport inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501142 R13A1.8 [Caenorhabditis elegans] gb|AAA81477.1| Hypothetical protein R13A1.8 [Caenorhabditis elegans] 1.0E-169
blast CAE61837 Hypothetical protein CBG05809 [Caenorhabditis briggsae] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR000971 EMBL-EBI Globin 4.4E-25
Sequence
Target Sequence 
>C. ELEGANS:182413_AT
aagtggtggctgattcatggcgtcttgttgaatctcgatcctcagcggcagaaacatccg
cttgctttggtctcttcgtatttcaacgtgtcttttcgaaaattccgatgctccgcccgc
tttttggattatcagaatccgatgacgtattcgatttacctgacaaccatccagttcgtc
ggcatgctcgactattcaccagcattctacatatttctgtgaaaaatgtggatgaactgg
aagcacaagtggctccgactgtattcaaatacggcgaaagacattatagaccagatatta
caccacacatgactgaagaaaacgttcgagtattttgtgctcaaatagtttgcaccgttt
tcgattttcttcgagacacggaggcgactcccaaatgtgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGGTGGCTGATTCATGGCGTCT 389 159 512 Antisense
ATGGCGTCTTGTTGAATCTCGATCC 674 53 528 Antisense
TCGATCCTCAGCGGCAGAAACATCC 316 603 546 Antisense
TGCTTTGGTCTCTTCGTATTTCAAC 506 579 574 Antisense
TTACCTGACAACCATCCAGTTCGTC 105 681 667 Antisense
AGTTCGTCGGCATGCTCGACTATTC 564 63 684 Antisense
GACTATTCACCAGCATTCTACATAT 154 373 701 Antisense
AAGCACAAGTGGCTCCGACTGTATT 293 151 752 Antisense
GACCAGATATTACACCACACATGAC 702 383 800 Antisense
TTTGCACCGTTTTCGATTTTCTTCG 333 667 860 Antisense
CACGGAGGCGACTCCCAAATGTGCC 550 199 888 Antisense
Sequence Source Affymetrix Proprietary Database