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[182412_at] G-protein coupled receptor, srh family

Description Y59A8A.4 /REP_DB=WormBase Gene ID /WP=CE26202 /TR=Q9GRZ8 /GB=CAC14401.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 16      6grp_cgc > 20      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 15.4
(-3)
A 		19.5
(-1)
A 		27.9
(3)
A 		16
(-2.7)
A 		13
B 12.6
(-0.7)
A 		4.1
(-3)
A 		17.9
(0.7)
A 		26.5
(3)
A 		22
C 13.5
(-3)
A 		27.3
(-0.7)
A 		16.3
(-2.5)
A 		49.7
(3)
P 		36
avr 13.8
(-3) 		17
(-1.9) 		20.7
(-0.6) 		30.7
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 34.2
(3)
A 		28.7
(1.9)
A 		29.7
(2.1)
A 		30.7
(2.3)
A 		12
(-1.3)
A 		3.4
(-3)
A 		31
B 18.5
(3)
A 		3.9
(-2.2)
A 		7.9
(-0.8)
A 		3.7
(-2.3)
A 		1.8
(-3)
A 		2
(-2.9)
A 		17
C 1.9
(-2.6)
A 		1.3
(-2.9)
A 		1.1
(-3)
A 		9.2
(0.8)
A 		1.4
(-2.9)
A 		13.9
(3)
A 		13
avr 18.2
(3) 		11.3
(-0.2) 		12.9
(0.6) 		14.5
(1.3) 		5.1
(-3) 		6.4
(-2.4) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 5.6
(1)
A 		4.2
(-0.7)
A 		7.3
(3)
A 		2.3
(-3)
A 		5
B 4
(0.9)
A 		1
(-3)
A 		4.2
(1.2)
A 		5.6
(3)
A 		5
C 4.5
(-3)
A 		7.8
(2.1)
A 		5.7
(-1.2)
A 		8.4
(3)
P 		4
avr 4.7
(-1.3) 		4.3
(-3) 		5.7
(3) 		5.4
(1.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 6.3
(0.5)
A 		10.2
(3)
A 		6.5
(0.6)
A 		7.8
(1.5)
A 		3.6
(-1.2)
A 		0.8
(-3)
A 		9
B 6.4
(3)
A 		1.3
(-2.4)
A 		1.9
(-1.7)
A 		1
(-2.7)
A 		0.7
(-3)
A 		0.7
(-3)
A 		6
C 0.7
(-2.5)
A 		0.4
(-2.9)
A 		0.3
(-3)
A 		1.9
(-0.8)
A 		0.4
(-2.9)
A 		4.7
(3)
A 		4
avr 4.5
(3) 		4
(2) 		2.9
(-0.3) 		3.6
(1.1) 		1.6
(-3) 		2.1
(-2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182412_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14304
Sequence Type Exemplar sequence
Representative Public ID Y59A8A.4 NCBI
Target Description Y59A8A.4 /REP_DB=WormBase Gene ID /WP=CE26202 /TR=Q9GRZ8 /GB=CAC14401.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075104(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075104 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-286) (srh-286) mRNA, complete cds. 11/11 None
SNAP00000001053 ENSEMBL cdna:SNAP chromosome:CEL140:V:17845440:17846782:-1 9/11 None
Y59A8A.4 ENSEMBL cdna:known chromosome:CEL140:V:17844059:17846782:-1 gene:Y59A8A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17838981-17840695(+) 89.82 90.02
chrV:17844058-17846782(-) 100.0 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srh family
Gene Symbol srh-286
Ensembl Y59A8A.4
Entrez Gene 190388 Entrez gene
SwissProt Q9GRZ8 EMBL-EBI
WormBase CE26202 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC14401 Hypothetical protein Y59A8A.4 [Caenorhabditis elegans] ref|NP_507505.1| Serpentine Receptor, class H family member (srh-286) [Caenorhabditis elegans] 0.0
blast CAC14401 Hypothetical protein Y59A8A.4 [Caenorhabditis elegans] ref|NP_507505.1| Serpentine Receptor, class H family member (srh-286) [Caenorhabditis elegans] 1.0E-140
blast CAA19565 Hypothetical protein Y94A7B.3 [Caenorhabditis elegans] ref|NP_507495.2| Serpentine Receptor, class H family member (srh-291) [Caenorhabditis elegans] 1.0E-91
blast CAA19567 Hypothetical protein Y94A7B.5 [Caenorhabditis elegans] ref|NP_507498.1| Serpentine Receptor, class H family member (srh-298) [Caenorhabditis elegans] 8.0E-85
blast CAA19565 Hypothetical protein Y94A7B.3 [Caenorhabditis elegans] ref|NP_507495.2| Serpentine Receptor, class H family member (srh-291) [Caenorhabditis elegans] 1.0E-75
blast CAC15865 Hypothetical protein Y94A7B.8 [Caenorhabditis elegans] ref|NP_507500.2| Serpentine Receptor, class H family member (srh-301) [Caenorhabditis elegans] 2.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.5E-124
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507505.1 7 15-36,49-71,91-113,134-151,190-212,241-263,273-295
Y59A8A.4 7 15-36,49-71,91-113,134-151,190-212,241-263,273-295
SNAP00000001053 5 15-36,49-71,91-113,134-151,190-212
Sequence
Target Sequence 
>C. ELEGANS:182412_AT
gtcaatggcggtactttcgctatccatttctttttatcaactacctatgggcaattctct
attgtgttcctgttatcctagatattccaaatcaagaatatgcacgaattgaagtatttc
acgaataccctcagattttcgactacgagtctgtcgaatcgaaaatctttgtgatcacct
tggattttactagaactgcactgcagcagagcatcttcacggttctggttctagaagagg
cttttgcttttgtagggcttattcgggttaatatgaataaggttatgaaggaggttcatt
cgtcactatcgaaacacacagttcacatgcataaagcttttattaaagctttaaacttac
agatcgcaatccccctgataatcctctttgctcccaccatcattggtgttttattcagaa
caatcataagcaatcatcaaggtttcaacaatgtagtgtacatctgctcatcacttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAATGGCGGTACTTTCGCTATCC 700 463 386 Antisense
TTCGCTATCCATTTCTTTTTATCAA 449 697 401 Antisense
GAATACCCTCAGATTTTCGACTACG 489 323 508 Antisense
GATTTTACTAGAACTGCACTGCAGC 413 429 568 Antisense
GCACTGCAGCAGAGCATCTTCACGG 167 317 583 Antisense
CATCTTCACGGTTCTGGTTCTAGAA 389 213 597 Antisense
GAGGCTTTTGCTTTTGTAGGGCTTA 159 405 622 Antisense
GAAGGAGGTTCATTCGTCACTATCG 27 335 672 Antisense
GTCACTATCGAAACACACAGTTCAC 444 465 687 Antisense
AGCTTTAAACTTACAGATCGCAATC 90 65 732 Antisense
AGTGTACATCTGCTCATCACTTCAC 613 59 840 Antisense
Sequence Source Affymetrix Proprietary Database