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[182411_at]

Description Y37H2A.4 /REP_DB=WormBase Gene ID /WP=CE24210 /TR=Q9U2P1 /GB=CAB60569.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 14      6grp_total > 96      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 93.2
(-2.8)
P 		84.4
(-3)
P 		126.2
(-2)
P 		326.4
(3)
P 		242
B 72.2
(-3)
P 		115.2
(-1.8)
P 		84
(-2.7)
A 		295.7
(3)
P 		224
C 95.4
(-2.9)
P 		88.2
(-3)
P 		108.5
(-2.6)
P 		405.2
(3)
P 		317
avr 86.9
(-3) 		95.9
(-2.8) 		106.2
(-2.5) 		342.4
(3) 		256

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 102.3
(-2.3)
P 		64.4
(-3)
P 		97.8
(-2.4)
P 		203.9
(-0.5)
P 		314.1
(1.4)
P 		404.4
(3)
P 		340
B 62.9
(-3)
P 		77.1
(-2.8)
P 		106.1
(-2.4)
P 		224.6
(-0.7)
P 		414.2
(2)
P 		481.4
(3)
P 		419
C 73.8
(-2.9)
P 		64.2
(-3)
M 		107.8
(-2.3)
P 		223.6
(-0.6)
P 		268.5
(0.1)
P 		457.6
(3)
P 		393
avr 79.7
(-2.8) 		68.6
(-3) 		103.9
(-2.4) 		217.4
(-0.6) 		332.3
(1.2) 		447.8
(3) 		379
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 33.9
(0.2)
P 		18.3
(-3)
P 		33
(-0)
P 		47.8
(3)
P 		30
B 23
(-2.5)
P 		28.5
(-1.8)
P 		19.5
(-3)
A 		63
(3)
P 		44
C 31.6
(-2.1)
P 		25.4
(-3)
P 		37.8
(-1.3)
P 		68.3
(3)
P 		43
avr 29.5
(-2.1) 		24.1
(-3) 		30.1
(-2) 		59.7
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 18.9
(-3)
P 		22.9
(-2.7)
P 		21.3
(-2.8)
P 		51.7
(-0.5)
P 		94.8
(2.7)
P 		98.5
(3)
P 		80
B 21.9
(-3)
P 		25.7
(-2.9)
P 		25.8
(-2.9)
P 		59.5
(-1.6)
P 		168.3
(2.6)
P 		179.5
(3)
P 		158
C 27.4
(-2.6)
P 		19.6
(-3)
M 		27.4
(-2.6)
P 		45
(-1.9)
P 		86.9
(0)
P 		153.2
(3)
P 		134
avr 22.7
(-3) 		22.7
(-3) 		24.8
(-2.9) 		52.1
(-1.5) 		116.7
(1.7) 		143.7
(3) 		121
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182411_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14152
Sequence Type Exemplar sequence
Representative Public ID Y37H2A.4 NCBI
Target Description Y37H2A.4 /REP_DB=WormBase Gene ID /WP=CE24210 /TR=Q9U2P1 /GB=CAB60569.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075135 NCBI Caenorhabditis elegans Y37H2A.4 (Y37H2A.4) mRNA, complete cds. 11/11 None
SNAP00000043008 ENSEMBL cdna:SNAP chromosome:CEL140:V:18126551:18127740:1 11/11 None
GENEFINDER00000043016 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18126551:18127740:1 11/11 None
Y37H2A.4 ENSEMBL cdna:known chromosome:CEL140:V:18126551:18127740:1 gene:Y37H2A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18126550-18127740(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2A.4
Entrez Gene 189628 Entrez gene
SwissProt Q9U2P1 EMBL-EBI
WormBase CE24210 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60569 Hypothetical protein Y37H2A.4 [Caenorhabditis elegans] ref|NP_507536.1| Y37H2A.4 [Caenorhabditis elegans] 0.0
blast CAB04531 Hypothetical protein F59A1.7 [Caenorhabditis elegans] ref|NP_507468.1| F59A1.7 [Caenorhabditis elegans] 1.0E-116
blast CAB60959 Hypothetical protein Y59A8B.11 [Caenorhabditis elegans] ref|NP_507530.1| Y59A8B.11 [Caenorhabditis elegans] 1.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.0E-39
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:182411_AT
gaacgttttattttctctacaatctatgaagacactgaagacgtggaaacagcgatgaac
tggtttaaatcaatttccgattctggaaacttgtggaaagtcggaaaaatcatattgaga
actagtgattgtaatattccgcgaattctgtccagtttccagccagcagtcctcagaagt
attacaattccgtaccatctgaatttgagcaccctggttgaaatcttcaaattggagcaa
tggaaaatggcaaaatcagcttcgattaaatcatgccaacgttcgcgtttccccttcgaa
aatctcgttcatctttcaaagttcagattacagctgggtcattttacggtcgctgatgct
attaaaatccgcgatgttctcctgaaatcggccaattttaacagcggaactatcattgtg
tttgacccttccataatagatattctgcgtgttttcgatccaaactataacgtcatggag
gataaaggtttctataacgatggagaaggagccaaattcctcatcacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACGTTTTATTTTCTCTACAATCT 512 347 400 Antisense
TTCCGCGAATTCTGTCCAGTTTCCA 245 697 536 Antisense
CAGCCAGCAGTCCTCAGAAGTATTA 358 203 559 Antisense
GTATTACAATTCCGTACCATCTGAA 199 453 578 Antisense
ATCTGAATTTGAGCACCCTGGTTGA 339 33 596 Antisense
AAATCATGCCAACGTTCGCGTTTCC 295 117 667 Antisense
TACAGCTGGGTCATTTTACGGTCGC 452 643 728 Antisense
TAAAATCCGCGATGTTCTCCTGAAA 626 639 762 Antisense
ATCGGCCAATTTTAACAGCGGAACT 92 3 786 Antisense
TATCATTGTGTTTGACCCTTCCATA 107 659 810 Antisense
GAAGGAGCCAAATTCCTCATCACAC 108 335 904 Antisense
Sequence Source Affymetrix Proprietary Database