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[182410_at]

Description T10E9.4 /REP_DB=WormBase Gene ID /WP=CE13549 /TR=O01600 /GB=AAB52472.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 11      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 23
(-3)
A 		49.3
(0.1)
A 		38.1
(-1.2)
A 		74.6
(3)
A 		52
B 45.9
(0.4)
A 		58.6
(2.5)
A 		25.9
(-3)
A 		61.5
(3)
A 		36
C 44.6
(-1.4)
A 		6.9
(-3)
A 		12.5
(-2.8)
A 		147.3
(3)
P 		140
avr 37.8
(-1.9) 		38.3
(-1.9) 		25.5
(-3) 		94.5
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 866
1 2 3 4 5 6 range
A 6
(-3)
A 		11.6
(-3)
A 		53.4
(-2.6)
A 		73.2
(-2.5)
A 		414.1
(0)
P 		817.1
(3)
P 		811
B 37.5
(-2.8)
A 		3.7
(-3)
A 		39.8
(-2.7)
A 		100.6
(-2.3)
P 		314
(-0.9)
P 		870
(3)
P 		866
C 12.4
(-3)
A 		83.4
(-2.4)
A 		24.8
(-2.9)
A 		101.3
(-2.3)
A 		303.7
(-0.7)
P 		771.7
(3)
P 		759
avr 18.6
(-3) 		32.9
(-2.9) 		39.3
(-2.8) 		91.7
(-2.5) 		343.9
(-0.6) 		819.6
(3) 		801
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 8.4
(-3)
A 		10.7
(2.5)
A 		10
(0.8)
A 		10.9
(3)
A 		3
B 14.6
(3)
A 		14.5
(2.9)
A 		6
(-3)
A 		13.1
(2)
A 		9
C 14.8
(0.4)
A 		2
(-3)
A 		4.4
(-2.4)
A 		24.8
(3)
P 		23
avr 12.6
(0.7) 		9.1
(-1.5) 		6.8
(-3) 		16.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 323
1 2 3 4 5 6 range
A 1.1
(-3)
A 		4.1
(-2.9)
A 		11.6
(-2.7)
A 		18.6
(-2.5)
A 		125
(0.8)
P 		198.9
(3)
P 		198
B 13.1
(-2.8)
A 		1.2
(-3)
A 		9.7
(-2.8)
A 		26.6
(-2.5)
P 		127.6
(-0.7)
P 		324.4
(3)
P 		323
C 4.6
(-3)
A 		25.4
(-2.5)
A 		6.3
(-3)
A 		20.4
(-2.6)
A 		98.3
(-0.8)
P 		258.3
(3)
P 		254
avr 6.3
(-3) 		10.2
(-2.9) 		9.2
(-2.9) 		21.9
(-2.6) 		117
(-0.4) 		260.5
(3) 		254
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182410_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1506
Sequence Type Exemplar sequence
Representative Public ID T10E9.4 NCBI
Target Description T10E9.4 /REP_DB=WormBase Gene ID /WP=CE13549 /TR=O01600 /GB=AAB52472.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059478(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059478 NCBI Caenorhabditis elegans T10E9.4 (T10E9.4) mRNA, complete cds. 11/11 None
SNAP00000042988 ENSEMBL cdna:SNAP chromosome:CEL140:I:6533842:6536772:1 11/11 None
GENEFINDER00000042998 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6533842:6536772:1 11/11 None
T10E9.4 ENSEMBL cdna:known chromosome:CEL140:I:6532917:6536812:1 gene:T10E9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6532845-6536701(+) 96.64 100.0
Public Domain and Genome References
Gene Title
Ensembl T10E9.4
Entrez Gene 172362 Entrez gene
SwissProt O01600 EMBL-EBI
WormBase CE13549 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52472 Hypothetical protein T10E9.4 [Caenorhabditis elegans] ref|NP_491879.1| T10E9.4 [Caenorhabditis elegans] 0.0
blast CAE67232 Hypothetical protein CBG12671 [Caenorhabditis briggsae] 1.0E-108
blast CAE67234 Hypothetical protein CBG12673 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 3.7E-49
Pfam IPR002593 EMBL-EBI Protein of unknown function DX 3.7E-49
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491879.1 1 602-624
T10E9.4 1 602-624
SNAP00000042988 1 558-580
GENEFINDER00000042998 1 558-580
Sequence
Target Sequence 
>C. ELEGANS:182410_AT
tcacttaccctgacaattgcaccatctggaaatggtactgagtcagcgacgcctaccttg
ggcccatatccatacttgactaattatccgtgtgatgctaacaaacctatcccatctcaa
ttcagcacctatgcattttgcgatcctgacactaatcgcgttggtattttgggcaaaagg
cacttaactggagaagaacgtactgaggtgaagggatcggcatgctcttctaacaaagac
tgcaagtcgggaactgtttgcgtgtatgttaatatcaataaacacgtctgctactaccat
ccgctgaagaaaatcgcccgtgatgtcagtcaaccatggctctatgtgctcattagcttc
ctcatttgcggttttatttttgtcattttggcagtcatgagcttcgtctgctaccgttcg
aagtctgtgtttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACTTACCCTGACAATTGCACCAT 350 625 1471 Antisense
TTGGGCCCATATCCATACTTGACTA 686 707 1528 Antisense
TATGCATTTTGCGATCCTGACACTA 268 657 1600 Antisense
GAAGGGATCGGCATGCTCTTCTAAC 195 335 1680 Antisense
AATAAACACGTCTGCTACTACCATC 450 169 1747 Antisense
GAAAATCGCCCGTGATGTCAGTCAA 408 353 1779 Antisense
GTCAGTCAACCATGGCTCTATGTGC 289 465 1795 Antisense
GCTCTATGTGCTCATTAGCTTCCTC 189 301 1809 Antisense
TAGCTTCCTCATTTGCGGTTTTATT 698 651 1824 Antisense
GCAGTCATGAGCTTCGTCTGCTACC 458 311 1861 Antisense
GCTACCGTTCGAAGTCTGTGTTTGA 154 303 1880 Antisense
Sequence Source Affymetrix Proprietary Database