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[182409_s_at]

Description F11C7.3 /REP_DB=WormBase Gene ID /WP=CE09350 /TR=Q19348 /GB=AAC69015.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 30      6grp_highest_nonorm > 42      6grp_total > 42      4grp_total > 61      6grp_cgc > 81      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1899
1 2 3 4 range
A 1792.7
(3)
P 		1436.9
(1.8)
P 		1302.7
(1.3)
P 		26.1
(-3)
A 		1767
B 1924.7
(3)
P 		1206.7
(0.7)
P 		1460.7
(1.5)
P 		60.3
(-3)
A 		1864
C 1762.1
(3)
P 		1061.4
(0.6)
P 		1197.7
(1)
P 		31.5
(-3)
A 		1731
avr 1826.5
(3) 		1235
(1) 		1320.4
(1.3) 		39.3
(-3) 		1787

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1066
1 2 3 4 5 6 range
A 1089.8
(1.7)
P 		1262.9
(3)
P 		1242.6
(2.9)
P 		1004.3
(1.1)
P 		433.2
(-3)
P 		448.1
(-2.9)
P 		830
B 743.1
(-0.9)
P 		991.7
(0.9)
P 		1293.1
(3)
P 		769.5
(-0.7)
P 		446.8
(-3)
P 		445.4
(-3)
P 		848
C 965.9
(-0.4)
P 		878.9
(-0.9)
P 		1499.4
(3)
P 		746.7
(-1.8)
P 		623.4
(-2.5)
P 		549.1
(-3)
P 		950
avr 932.9
(0.1) 		1044.5
(0.9) 		1345
(3) 		840.2
(-0.5) 		501.1
(-2.9) 		480.9
(-3) 		864
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 649
1 2 3 4 range
A 652.7
(3)
P 		311.9
(-0.2)
P 		340.6
(0.1)
P 		3.8
(-3)
A 		649
B 613.8
(3)
P 		298
(-0.2)
P 		338.5
(0.3)
P 		12.8
(-3)
A 		601
C 583.3
(3)
P 		305.2
(0.1)
P 		417.4
(1.3)
P 		5.3
(-3)
A 		578
avr 616.6
(3) 		305
(-0.1) 		365.5
(0.5) 		7.3
(-3) 		609

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 200.9
(-1.4)
P 		449.2
(3)
P 		270.6
(-0.2)
P 		254.7
(-0.4)
P 		130.7
(-2.6)
P 		109.1
(-3)
P 		340
B 258.6
(0.4)
P 		330.1
(3)
P 		314
(2.4)
P 		203.8
(-1.6)
P 		181.5
(-2.4)
P 		166.1
(-3)
P 		164
C 358
(2.4)
P 		268.2
(0.1)
P 		381.6
(3)
P 		150.2
(-3)
P 		201.7
(-1.7)
P 		183.8
(-2.1)
P 		231
avr 272.5
(0.7) 		349.2
(3) 		322.1
(2.2) 		202.9
(-1.5) 		171.3
(-2.4) 		153
(-3) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182409_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17888
Sequence Type Exemplar sequence
Representative Public ID F11C7.3 NCBI
Target Description F11C7.3 /REP_DB=WormBase Gene ID /WP=CE09350 /TR=Q19348 /GB=AAC69015.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029382(11), NM_171818(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029382 NCBI Caenorhabditis elegans Venom-Allergen-like Protein family member (vap-1) (vap-1) mRNA, complete cds. 11/11 None
NM_171818 NCBI Caenorhabditis elegans Venom-Allergen-like Protein family member (vap-1) (vap-1) mRNA, complete cds. 11/11 A 
GENEFINDER00000033136 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17393075:17396370:-1 11/11 None
SNAP00000033125 ENSEMBL cdna:SNAP chromosome:CEL140:X:17393903:17396370:-1 11/11 None
F11C7.3b ENSEMBL cdna:known chromosome:CEL140:X:17393701:17396370:-1 gene:F11C7.3 11/11 A 
F11C7.3a ENSEMBL cdna:known chromosome:CEL140:X:17393903:17396370:-1 gene:F11C7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17393901-17396369(-) 100.0 100.0
Public Domain and Genome References
Ensembl F11C7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM54195 Venom-allergen-like protein protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024553.1| Venom-Allergen-like Protein family member (vap-1) [Caenorhabditis elegans] 0.0
blast AAC69015 Venom-allergen-like protein protein 1, isoform a [Caenorhabditis elegans] ref|NP_741951.1| Venom-Allergen-like Protein family member (vap-1) [Caenorhabditis elegans] gb|AAD27559.1| venom allergen-like protein [Caenorhabditis elegans] 0.0
blast CAE69675 Hypothetical protein CBG15925 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 2.8E-28
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 1.4E-50
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 3.6E-48
Sequence
Target Sequence 
>C. ELEGANS:182409_S_AT
tgagactttcacaatgtgcccttcggtcacggaccagtcggatcaggcgcgtcaaaactt
cttggacacccataacaaattgcgtacaagccttgccaagggacttgaagctgatggaat
tgccgctggagcatttgcaccaatggccaagcaaatgccaaaactggtaaaatacagctg
cacagttgaagcaaacgccagaacatgggcaaaaggatgcctttaccagcattcaacaag
cgcacagagaccaggactcggtgaaaatctttatatgatcagcattaacaacatgcctaa
aattcaaaccgcggaggactcctcaaaggcttggtggtccgagttgaaagacttcggagt
cggttctgacaacattctgacccaagcagtttttgatcgtggcgttggacattacacaca
aatggcatgggaaggaactactgaaattggatgttttgtggagaattgtccaacattcac
ttattccgtatgccaatatggtccagccggaaactacatgaaccaactaatctataccaa
gggctcaccatgcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGACTTTCACAATGTGCCCTTCG 400 569 669 Antisense
GGCGCGTCAAAACTTCTTGGACACC 114 543 714 Antisense
ACAAATTGCGTACAAGCCTTGCCAA 19 111 743 Antisense
GAATTGCCGCTGGAGCATTTGCACC 59 325 785 Antisense
GCCTTTACCAGCATTCAACAAGCGC 463 281 887 Antisense
AAGCGCACAGAGACCAGGACTCGGT 405 149 906 Antisense
GACTTCGGAGTCGGTTCTGACAACA 668 371 1018 Antisense
GACAACATTCTGACCCAAGCAGTTT 643 365 1036 Antisense
AAGCAGTTTTTGATCGTGGCGTTGG 10 151 1052 Antisense
ATTGTCCAACATTCACTTATTCCGT 187 5 1133 Antisense
TCTATACCAAGGGCTCACCATGCAC 166 615 1199 Antisense
Sequence Source Affymetrix Proprietary Database