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[182408_at]

Description F13A2.3 /REP_DB=WormBase Gene ID /WP=CE09365 /TR=O16894 /GB=AAB69898.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 109.3
(1.5)
A 		112.2
(3)
A 		100.8
(-3)
A 		101.5
(-2.6)
A 		11
B 99.2
(-0.4)
A 		142.1
(3)
A 		99.1
(-0.4)
A 		65.9
(-3)
A 		76
C 129.6
(3)
A 		100.4
(-3)
A 		125.9
(2.2)
A 		108.7
(-1.3)
A 		29
avr 112.7
(1.7) 		118.2
(3) 		108.6
(0.8) 		92
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 195.9
(3)
A 		23.3
(-3)
A 		103.4
(-0.2)
A 		56.1
(-1.9)
A 		92.2
(-0.6)
A 		78.5
(-1.1)
A 		173
B 133.6
(2.7)
A 		86.1
(-1.9)
A 		136.3
(3)
A 		131.3
(2.5)
A 		112
(0.6)
A 		74.8
(-3)
A 		62
C 94.8
(-0.7)
A 		143.3
(1.7)
A 		66.8
(-2.1)
A 		169.4
(3)
A 		49.7
(-3)
A 		96.2
(-0.7)
A 		120
avr 141.4
(3) 		84.2
(-2.9) 		102.2
(-1) 		118.9
(0.7) 		84.6
(-2.9) 		83.2
(-3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 39.8
(3)
A 		24.4
(-0.7)
A 		26.4
(-0.2)
A 		14.9
(-3)
A 		25
B 31.6
(2)
A 		35.1
(3)
A 		23
(-0.4)
A 		14
(-3)
A 		21
C 42.9
(2.8)
A 		28.9
(-0.5)
A 		43.9
(3)
A 		18.3
(-3)
A 		26
avr 38.1
(3) 		29.5
(0.7) 		31.1
(1.1) 		15.7
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 36.1
(3)
A 		8.3
(-3)
A 		22.5
(0.1)
A 		14.2
(-1.7)
A 		27.8
(1.2)
A 		19.1
(-0.7)
A 		28
B 46.5
(3)
A 		28.7
(-2.7)
A 		33.1
(-1.3)
A 		34.8
(-0.8)
A 		45.5
(2.7)
A 		27.9
(-3)
A 		19
C 35.1
(1.1)
A 		43.7
(3)
A 		17
(-2.8)
A 		34.1
(0.9)
A 		16.1
(-3)
A 		32.2
(0.5)
A 		28
avr 39.2
(3) 		26.9
(-1.9) 		24.2
(-3) 		27.7
(-1.6) 		29.8
(-0.8) 		26.4
(-2.1) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182408_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15127
Sequence Type Exemplar sequence
Representative Public ID F13A2.3 NCBI
Target Description F13A2.3 /REP_DB=WormBase Gene ID /WP=CE09365 /TR=O16894 /GB=AAB69898.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071808 NCBI Caenorhabditis elegans F13A2.3 (F13A2.3) mRNA, complete cds. 11/11 None
SNAP00000037898 ENSEMBL cdna:SNAP chromosome:CEL140:V:4392382:4396171:-1 11/11 None
GENEFINDER00000037910 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4393242:4396171:-1 11/11 None
F13A2.3 ENSEMBL cdna:known chromosome:CEL140:V:4393242:4396348:-1 gene:F13A2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4393241-4396348(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13A2.3
Entrez Gene 184394 Entrez gene
SwissProt O16894 EMBL-EBI
WormBase CE09365 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69898 Hypothetical protein F13A2.3 [Caenorhabditis elegans] ref|NP_504209.1| F13A2.3 [Caenorhabditis elegans] 0.0
blast AAB69898 Hypothetical protein F13A2.3 [Caenorhabditis elegans] ref|NP_504209.1| F13A2.3 [Caenorhabditis elegans] 1.0E-172
blast AAB69898 Hypothetical protein F13A2.3 [Caenorhabditis elegans] ref|NP_504209.1| F13A2.3 [Caenorhabditis elegans] 1.0E-131
Sequence
Target Sequence 
>C. ELEGANS:182408_AT
tccattcgagggacccagctatgccacgaggcttccctacatgtacttggccgttcataa
catccttgaccaagccaactacctcttcaaaaatctggatggactggagcaaggaattcc
aaatccgctttaccaaaactggaagcaaacggttcagtccaccggaaattttccgcagtt
gagctggaaccaacaagccccagaagctatgcccatcaaacaaaaatctgaagctaatgg
aacgaagcctcacaacaacaccactcaccaccgacagtttgattcaagcagaagacgcga
ggagagacaccaggctgccccataccaaacgagaagtgcgtatggacggtacagagacag
ctggcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATTCGAGGGACCCAGCTATGCC 423 589 405 Antisense
TGTACTTGGCCGTTCATAACATCCT 690 557 446 Antisense
ACATCCTTGACCAAGCCAACTACCT 311 105 464 Antisense
TTCCAAATCCGCTTTACCAAAACTG 103 695 521 Antisense
GAAGCAAACGGTTCAGTCCACCGGA 285 339 546 Antisense
CCAACAAGCCCCAGAAGCTATGCCC 155 275 594 Antisense
TGGAACGAAGCCTCACAACAACACC 91 545 642 Antisense
CACTCACCACCGACAGTTTGATTCA 242 197 666 Antisense
AGACGCGAGGAGAGACACCAGGCTG 473 71 697 Antisense
CTGCCCCATACCAAACGAGAAGTGC 237 231 719 Antisense
GGACGGTACAGAGACAGCTGGCGCC 629 523 748 Antisense
Sequence Source Affymetrix Proprietary Database