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[182407_at]

Description T07D3.2 /REP_DB=WormBase Gene ID /WP=CE13357 /TR=O16726 /GB=AAB66183.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 43      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 7.3
(-3)
A 		9.8
(2.2)
A 		9.5
(1.6)
A 		10.2
(3)
A 		3
B 8.9
(-2.3)
A 		35.3
(3)
A 		5.5
(-3)
A 		6
(-2.9)
A 		30
C 3.9
(-2.5)
A 		10.7
(3)
A 		3.3
(-3)
A 		7.8
(0.6)
A 		7
avr 6.7
(-2.7) 		18.6
(3) 		6.1
(-3) 		8
(-2.1) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 14
(3)
A 		2.5
(-2.9)
A 		2.7
(-2.8)
A 		2.3
(-3)
A 		5.1
(-1.6)
A 		5.6
(-1.3)
A 		12
B 6.4
(3)
A 		4.4
(-0.5)
A 		6.4
(3)
A 		3
(-3)
A 		4.2
(-0.9)
A 		3.7
(-1.8)
A 		3
C 3.3
(-3)
A 		7.7
(0.1)
A 		3.6
(-2.8)
A 		11.8
(3)
A 		4.5
(-2.2)
A 		5.1
(-1.7)
A 		9
avr 7.9
(3) 		4.9
(-1.9) 		4.2
(-3) 		5.7
(-0.6) 		4.6
(-2.4) 		4.8
(-2) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.6
(3)
A 		2.1
(0.3)
A 		2.5
(2.5)
A 		1.5
(-3)
A 		1
B 2.8
(-1.8)
A 		8.7
(3)
A 		1.3
(-3)
A 		1.3
(-3)
A 		7
C 1.3
(-2.7)
A 		3.1
(3)
A 		1.2
(-3)
A 		1.3
(-2.7)
A 		2
avr 2.2
(-1.5) 		4.6
(3) 		1.7
(-2.4) 		1.4
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 2.6
(3)
A 		0.9
(-2.1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		1.5
(-0.3)
A 		1.4
(-0.6)
A 		2
B 2.2
(3)
A 		1.5
(-0)
A 		1.6
(0.4)
A 		0.8
(-3)
A 		1.7
(0.9)
A 		1.4
(-0.4)
A 		1
C 1.2
(-1.8)
A 		2.3
(2.6)
A 		0.9
(-3)
A 		2.4
(3)
A 		1.4
(-1)
A 		1.7
(0.2)
A 		2
avr 2
(3) 		1.6
(0.6) 		1
(-3) 		1.3
(-1.2) 		1.5
(0) 		1.5
(0) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182407_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5888
Sequence Type Exemplar sequence
Representative Public ID T07D3.2 NCBI
Target Description T07D3.2 /REP_DB=WormBase Gene ID /WP=CE13357 /TR=O16726 /GB=AAB66183.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061443(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061443 NCBI Caenorhabditis elegans T07D3.2 (T07D3.2) mRNA, complete cds. 11/11 None
GENEFINDER00000029318 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:901938:903913:1 9/11 None
T07D3.2 ENSEMBL cdna:known chromosome:CEL140:II:901938:903621:1 gene:T07D3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:901936-903620(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07D3.2
Entrez Gene 188222 Entrez gene
SwissProt O16726 EMBL-EBI
WormBase CE13357 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66183 Hypothetical protein T07D3.2 [Caenorhabditis elegans] ref|NP_493844.1| T07D3.2 [Caenorhabditis elegans] 1.0E-140
blast AAB66183 Hypothetical protein T07D3.2 [Caenorhabditis elegans] ref|NP_493844.1| T07D3.2 [Caenorhabditis elegans] 1.0E-104
blast CAB07347 Hypothetical protein F10A3.11 [Caenorhabditis elegans] ref|NP_507072.1| F10A3.11 [Caenorhabditis elegans] 1.0E-35
blast CAB07347 Hypothetical protein F10A3.11 [Caenorhabditis elegans] ref|NP_507072.1| F10A3.11 [Caenorhabditis elegans] 3.0E-25
blast CAB00094 Hypothetical protein F29D10.3 [Caenorhabditis elegans] ref|NP_492392.2| F29D10.3 [Caenorhabditis elegans] 4.0E-16
blast CAB00094 Hypothetical protein F29D10.3 [Caenorhabditis elegans] ref|NP_492392.2| F29D10.3 [Caenorhabditis elegans] 9.0E-13
Sequence
Target Sequence 
>C. ELEGANS:182407_AT
aattgttttctagcatactactcaagtgtatgccatctatttgaatatggaaatatgtct
gtaaaatctagcaagagtgtagttgctttcaaaaccagaaattacgaatgcccgtctgca
aatagttcatttccggaattttcaaccacagaccgctggattgaaaacgatgttggatat
gaaaatgaaatctctcccgtcggagaaatctcatggaaaatttctttcagtatttttcaa
tgctcaaacaactcgaaaatattcttaagagataccatctttgtttgtatcggggtccgt
ttcttccctaacattacctgtggaaatcacaacagcgacatagaaagagaaaatctggtt
tcgaaaaaatatggaaactatttatctcttgtgtggattgatggtaatttgggagggttt
ctagatgaaactcatgttgtaataccgataaaatgtcaccgtattattgctggagaggag
ttgcttgtcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTTTTCTAGCATACTACTCAA 300 179 166 Antisense
ACTACTCAAGTGTATGCCATCTATT 489 101 182 Antisense
GAAATTACGAATGCCCGTCTGCAAA 334 363 263 Antisense
GCCCGTCTGCAAATAGTTCATTTCC 353 287 275 Antisense
TTTTCAACCACAGACCGCTGGATTG 693 675 304 Antisense
TGAAAATGAAATCTCTCCCGTCGGA 87 573 345 Antisense
CCATCTTTGTTTGTATCGGGGTCCG 65 267 440 Antisense
TTTCTTCCCTAACATTACCTGTGGA 673 657 465 Antisense
GGAAACTATTTATCTCTTGTGTGGA 452 527 538 Antisense
AATGTCACCGTATTATTGCTGGAGA 59 165 617 Antisense
GCTGGAGAGGAGTTGCTTGTCGAAA 688 293 634 Antisense
Sequence Source Affymetrix Proprietary Database