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[182406_at]

Description Y37H2A.8 /REP_DB=WormBase Gene ID /WP=CE24214 /TR=Q9U2N8 /GB=CAB60572.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 7.5
(-0.4)
A 		4.1
(-3)
A 		12
(3)
A 		8.8
(0.6)
A 		8
B 8.8
(-3)
A 		9.5
(-2.9)
A 		10
(-2.8)
A 		41.5
(3)
A 		33
C 7.9
(-1.9)
A 		6.5
(-2.3)
A 		3.3
(-3)
A 		29.1
(3)
A 		26
avr 8.1
(-2.6) 		6.7
(-3) 		8.4
(-2.5) 		26.5
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 9.5
(-2.6)
A 		34.8
(0.7)
A 		6.7
(-3)
A 		52.1
(3)
A 		45.5
(2.1)
A 		28.3
(-0.1)
A 		45
B 5.8
(-3)
A 		5.7
(-3)
A 		6.8
(-2.9)
A 		65.9
(3)
A 		29.9
(-0.6)
A 		39.1
(0.3)
A 		60
C 6.4
(-1.8)
A 		9.1
(-0.9)
A 		3.1
(-3)
A 		8.1
(-1.2)
A 		9.1
(-0.9)
A 		20.2
(3)
A 		17
avr 7.2
(-2.7) 		16.5
(-1.2) 		5.5
(-3) 		42
(3) 		28.2
(0.7) 		29.2
(0.9) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2.7
(1.9)
A 		0.9
(-3)
A 		3.1
(3)
A 		1.3
(-1.9)
A 		2
B 2.8
(-2.5)
A 		2.4
(-2.9)
A 		2.3
(-3)
A 		8.8
(3)
A 		7
C 2.6
(-0.6)
A 		1.9
(-1.7)
A 		1.1
(-3)
A 		4.9
(3)
A 		4
avr 2.7
(-1.2) 		1.7
(-3) 		2.2
(-2.1) 		5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 1.7
(-2.9)
A 		12.4
(2.4)
A 		1.5
(-3)
A 		13.2
(2.8)
A 		13.7
(3)
A 		6.9
(-0.3)
A 		12
B 2
(-2.9)
A 		1.9
(-2.9)
A 		1.7
(-3)
A 		17.4
(3)
A 		12.2
(1)
A 		14.6
(1.9)
A 		16
C 2.4
(-1.4)
A 		2.8
(-1)
A 		0.8
(-3)
A 		1.6
(-2.2)
A 		3
(-0.8)
A 		6.8
(3)
A 		6
avr 2
(-2.6) 		5.7
(-0.2) 		1.3
(-3) 		10.7
(3) 		9.6
(2.3) 		9.4
(2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182406_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14591
Sequence Type Exemplar sequence
Representative Public ID Y37H2A.8 NCBI
Target Description Y37H2A.8 /REP_DB=WormBase Gene ID /WP=CE24214 /TR=Q9U2N8 /GB=CAB60572.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075139 NCBI Caenorhabditis elegans Y37H2A.8 (Y37H2A.8) mRNA, complete cds. 11/11 None
SNAP00000043009 ENSEMBL cdna:SNAP chromosome:CEL140:V:18128293:18141406:1 9/11 None
GENEFINDER00000043020 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18137296:18138533:1 9/11 None
Y37H2A.8 ENSEMBL cdna:known chromosome:CEL140:V:18137296:18138642:1 gene:Y37H2A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18137295-18138642(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2A.8
Entrez Gene 189631 Entrez gene
SwissProt Q9U2N8 EMBL-EBI
WormBase CE24214 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60570 Hypothetical protein Y37H2A.5 [Caenorhabditis elegans] ref|NP_507537.1| Y37H2A.5 [Caenorhabditis elegans] 0.0
blast CAB60575 Hypothetical protein Y37H2A.6 [Caenorhabditis elegans] ref|NP_507538.1| Y37H2A.6 [Caenorhabditis elegans] 0.0
blast CAB60572 Hypothetical protein Y37H2A.8 [Caenorhabditis elegans] ref|NP_507540.1| Y37H2A.8 [Caenorhabditis elegans] 1.0E-180
blast CAB60572 Hypothetical protein Y37H2A.8 [Caenorhabditis elegans] ref|NP_507540.1| Y37H2A.8 [Caenorhabditis elegans] 1.0E-157
blast CAB60572 Hypothetical protein Y37H2A.8 [Caenorhabditis elegans] ref|NP_507540.1| Y37H2A.8 [Caenorhabditis elegans] 1.0E-149
blast CAB04510 Hypothetical protein F57G4.8 [Caenorhabditis elegans] ref|NP_507465.1| F57G4.8 [Caenorhabditis elegans] 9.0E-84
blast CAB04510 Hypothetical protein F57G4.8 [Caenorhabditis elegans] ref|NP_507465.1| F57G4.8 [Caenorhabditis elegans] 1.0E-83
blast CAB60576 Hypothetical protein Y37H2A.7 [Caenorhabditis elegans] ref|NP_507539.1| Y37H2A.7 [Caenorhabditis elegans] 7.0E-76
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.4E-23
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0018
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.2E-49
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-46
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-16
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.1E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0018
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.4E-21
Sequence
Target Sequence 
>C. ELEGANS:182406_AT
ccgccgtgaggaacccgaggatgaaagattcattattgcatacggggaacaaaaagtcaa
tgtggaaagcggttgtaatgttacagctggtctctccgatctgtaccgaatcatgaaaaa
tccgaaattctcacttgaaactctcgacgtcacattctacaaatacctccgcgaagagaa
tatggaactcgttaaaaaaatgctgaaaaagctgaaatccgttgatgttaacactgtaat
cctccgtgatcccttcggctccactaatcatcacgttcttccgtatttgaagccgggaaa
actcgaggaaattcaattcgttccgcattcctatgtctcgtcgtgtcatgagattctcaa
gacgaagcagtttaaacttgccaagcgattcttttgggaagatcaagagtggaaaatgtc
gaaagacacgaaacttgggaagtttttccacttggaacactttactacttcggtggaaga
attcacaaaacaagacgcgagaaaattaaaaatgttcgttttaacaacaaaaatttggtt
ttattttcaaataattaattttccaggttctcatgaaatagcccggcttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCGTGAGGAACCCGAGGATGAA 12 263 351 Antisense
TAATGTTACAGCTGGTCTCTCCGAT 323 637 426 Antisense
CTCACTTGAAACTCTCGACGTCACA 633 227 480 Antisense
CACATTCTACAAATACCTCCGCGAA 202 195 501 Antisense
TTAACACTGTAATCCTCCGTGATCC 111 683 578 Antisense
GGAAATTCAATTCGTTCCGCATTCC 172 527 657 Antisense
TTCCTATGTCTCGTCGTGTCATGAG 223 699 678 Antisense
AACTTGCCAAGCGATTCTTTTGGGA 283 139 725 Antisense
TTCCACTTGGAACACTTTACTACTT 280 683 796 Antisense
TAATTAATTTTCCAGGTTCTCATGA 540 633 902 Antisense
TTCTCATGAAATAGCCCGGCTTCCA 489 691 918 Antisense
Sequence Source Affymetrix Proprietary Database