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[182405_at]

Description C01G10.4 /REP_DB=WormBase Gene ID /WP=CE07813 /TR=Q93164 /GB=CAB02706.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 51      6grp_highest_nonorm > 62      6grp_total > 51      4grp_total > 52      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 228
1 2 3 4 range
A 175.2
(0.5)
P 		269.5
(3)
P 		194.5
(1)
P 		45
(-3)
A 		225
B 182.2
(1.3)
P 		239.2
(3)
P 		158.5
(0.6)
P 		41.1
(-3)
A 		198
C 226.6
(3)
P 		167.2
(0.3)
P 		173.4
(0.6)
P 		96.3
(-3)
A 		130
avr 194.7
(1.9) 		225.3
(3) 		175.5
(1.2) 		60.8
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 633
1 2 3 4 5 6 range
A 298.1
(-1.6)
P 		444
(0.1)
P 		698.9
(3)
P 		535.6
(1.1)
P 		291
(-1.6)
P 		171.1
(-3)
P 		528
B 379.7
(-1.1)
P 		483.5
(-0.1)
P 		803.6
(3)
P 		557.6
(0.6)
P 		359.3
(-1.3)
P 		181.8
(-3)
P 		622
C 410.3
(-0.4)
P 		460.3
(0.4)
P 		494.3
(0.8)
P 		641.2
(3)
P 		259.7
(-2.6)
P 		231.6
(-3)
P 		410
avr 362.7
(-0.9) 		462.6
(0.4) 		665.6
(3) 		578.1
(1.9) 		303.3
(-1.6) 		194.8
(-3) 		471
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 63.8
(3)
P 		58.5
(2.4)
P 		50.9
(1.6)
P 		6.6
(-3)
A 		57
B 58.1
(2.9)
P 		59.1
(3)
P 		36.7
(0.3)
P 		8.8
(-3)
A 		50
C 75
(3)
P 		48.1
(0.3)
P 		60.4
(1.5)
P 		16.2
(-3)
A 		59
avr 65.6
(3) 		55.2
(1.9) 		49.3
(1.2) 		10.5
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 154
1 2 3 4 5 6 range
A 54.9
(-2.3)
P 		157.9
(3)
P 		152.2
(2.7)
P 		135.8
(1.9)
P 		87.8
(-0.6)
P 		41.6
(-3)
P 		116
B 132.1
(0)
P 		160.9
(1.4)
P 		195.1
(3)
P 		147.7
(0.8)
P 		146
(0.7)
P 		67.8
(-3)
P 		127
C 152.1
(3)
P 		140.5
(2.1)
P 		125.8
(0.9)
P 		128.9
(1.1)
P 		84
(-2.5)
P 		77.5
(-3)
P 		75
avr 113
(0.2) 		153.1
(2.7) 		157.7
(3) 		137.5
(1.7) 		105.9
(-0.3) 		62.3
(-3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182405_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13572
Sequence Type Exemplar sequence
Representative Public ID C01G10.4 NCBI
Target Description C01G10.4 /REP_DB=WormBase Gene ID /WP=CE07813 /TR=Q93164 /GB=CAB02706.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074318 NCBI Caenorhabditis elegans C01G10.4 (C01G10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000004634 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15092179:15093648:1 11/11 None
C01G10.4 ENSEMBL cdna:known chromosome:CEL140:V:15092341:15093648:1 gene:C01G10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004625 4/11 Cross Hyb Matching Probes None
SNAP00000004626 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15092340-15093648(+) 59.63 100.0
Public Domain and Genome References
Gene Title
Ensembl C01G10.4
Entrez Gene 182081 Entrez gene
SwissProt Q93164 EMBL-EBI
WormBase CE07813 Wormbase
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506719.1 2 3-25,88-110
C01G10.4 2 3-25,88-110
GENEFINDER00000004634 2 36-58,121-143
Sequence
Target Sequence 
>C. ELEGANS:182405_AT
tcctctcaactgccaacgcatattatacttactattactatccaaataataacaactaca
acaacaacaatggctacacgacatactactactacccgaataataacaataatggatact
attacaataataatgggtacaacaatggatacaacacttactattacacctggggaaaat
atagttcaagtccctcatctcctgaaagcctaacaaaaatgaaattccttacactgatcg
ctactcttcttgtgcttttcgctgcaaccgacgcttactatacatattattactacccaa
acaacaactacaacaacaacaatggctacacgacatactactactacccgaataataaca
ataatggatactactacaataatggatgctctggatgcaacagtaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCTCAACTGCCAACGCATATTA 10 589 50 Antisense
ACTGCCAACGCATATTATACTTACT 173 97 58 Antisense
TTATACTTACTATTACTATCCAAAT 91 679 72 Antisense
ACAACACTTACTATTACACCTGGGG 37 109 200 Antisense
AAATATAGTTCAAGTCCCTCATCTC 701 115 226 Antisense
CTCATCTCCTGAAAGCCTAACAAAA 475 229 243 Antisense
TGAAATTCCTTACACTGATCGCTAC 645 571 269 Antisense
GCAACCGACGCTTACTATACATATT 491 319 313 Antisense
TATTACTACCCAAACAACAACTACA 599 659 337 Antisense
ACTACTACAATAATGGATGCTCTGG 523 101 419 Antisense
GGATGCTCTGGATGCAACAGTAATG 620 513 433 Antisense
Sequence Source Affymetrix Proprietary Database