[Home] | [Total List]

[182404_at]

Description C14E2.5 /REP_DB=WormBase Gene ID /WP=CE06832 /TR=Q17986 /GB=AAA85750.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 8.2
(-3)
A 		52.6
(3)
A 		28.8
(-0.2)
A 		43.8
(1.8)
A 		44
B 48.7
(1.2)
A 		52.8
(3)
A 		39.4
(-3)
A 		43.8
(-1)
A 		13
C 10.7
(-3)
A 		36.4
(-1.1)
A 		15
(-2.7)
A 		93.8
(3)
A 		83
avr 22.5
(-3) 		47.3
(0.9) 		27.7
(-2.2) 		60.5
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 7.1
(-3)
A 		21.9
(-0)
A 		8.4
(-2.7)
A 		8.3
(-2.8)
A 		36.7
(3)
A 		11
(-2.2)
A 		30
B 9
(-3)
A 		22
(1.1)
A 		28.1
(3)
A 		17.5
(-0.3)
A 		10.7
(-2.5)
A 		10.8
(-2.4)
A 		19
C 7
(-3)
A 		15.5
(1)
A 		19.8
(3)
A 		16.9
(1.6)
A 		13.9
(0.2)
A 		7.8
(-2.6)
A 		13
avr 7.7
(-3) 		19.8
(2.7) 		18.8
(2.2) 		14.2
(0.1) 		20.4
(3) 		9.9
(-2) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3
(-3)
A 		11.4
(3)
A 		7.5
(0.2)
A 		6.4
(-0.6)
A 		8
B 15.5
(3)
A 		13
(0.7)
A 		9.1
(-3)
A 		9.3
(-2.8)
A 		6
C 3.5
(-3)
A 		10.5
(0.4)
A 		5.2
(-2.2)
A 		15.8
(3)
A 		12
avr 7.3
(-3) 		11.6
(3) 		7.3
(-3) 		10.5
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(-3)
A 		7.8
(1)
A 		1.8
(-2.7)
A 		2.1
(-2.5)
A 		11.1
(3)
A 		2.7
(-2.1)
A 		10
B 3.1
(-3)
A 		7.3
(3)
A 		6.8
(2.3)
A 		4.6
(-0.9)
A 		4.4
(-1.1)
A 		4
(-1.7)
A 		4
C 2.6
(-3)
A 		4.7
(2.3)
A 		5
(3)
A 		3.4
(-1)
A 		4.5
(1.8)
A 		2.6
(-3)
A 		2
avr 2.3
(-3) 		6.6
(2.9) 		4.5
(0) 		3.4
(-1.5) 		6.7
(3) 		3.1
(-1.9) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182404_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18085
Sequence Type Exemplar sequence
Representative Public ID C14E2.5 NCBI
Target Description C14E2.5 /REP_DB=WormBase Gene ID /WP=CE06832 /TR=Q17986 /GB=AAA85750.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075933(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075933 NCBI Caenorhabditis elegans C14E2.5 (C14E2.5) mRNA, complete cds. 11/11 None
GENEFINDER00000021835 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1818859:1824987:-1 10/11 None
C14E2.5 ENSEMBL cdna:known chromosome:CEL140:X:1823610:1825334:-1 gene:C14E2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1823609-1825335(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14E2.5
Entrez Gene 182617 Entrez gene
SwissProt Q17986 EMBL-EBI
WormBase CE35397 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA85749 Hypothetical protein C14E2.4 [Caenorhabditis elegans] ref|NP_508333.1| C14E2.4 [Caenorhabditis elegans] 0.0
blast AAA85750 Hypothetical protein C14E2.5 [Caenorhabditis elegans] ref|NP_508334.2| C14E2.5 [Caenorhabditis elegans] 4.0E-68
blast CAE61721 Hypothetical protein CBG05671 [Caenorhabditis briggsae] 8.0E-66
blast CAA21512 Hypothetical protein Y43F8B.4 [Caenorhabditis elegans] ref|NP_507795.1| Y43F8B.4 [Caenorhabditis elegans] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR005123 EMBL-EBI 2OG-Fe(II) oxygenase superfamily 2.2E-13
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508334.2 1 119-141
C14E2.5 1 119-141
GENEFINDER00000021835 2 125-144,151-168
Sequence
Target Sequence 
>C. ELEGANS:182404_AT
attccacgcaccattttccaaggatgtccagttttcttcaaacatttcagcatactttcc
atgatggactccgattatgacattgtgcatactgcaatggaaattccaacatttgccaga
gctctgaacgcggagcctaagagccagctctttttgaaagagaatcaagatagtgtgagt
tatttttatcgtgtacattaccacttttatacagtaattgaacttgggaaaaatttagcc
tataatttttatagccaaagattttggagccagacaactatggtttcaaatttttttcag
cctaggcttctcgtgtctactgctgaaaaaaatggctcaaccaccgtatttgacagcgaa
agttgccggctcgacgatcttgcagagtacgtgcagatgctggctgccaagcaggctcgg
tgtaacgcaaacatcaagaagctggaacaatcgacacgaaactttgcctccatcgcaatt
ccagcttttgtcatcattcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCACGCACCATTTTCCAAGGAT 403 7 67 Antisense
ATTCCAACATTTGCCAGAGCTCTGA 399 7 169 Antisense
GAACGCGGAGCCTAAGAGCCAGCTC 376 345 192 Antisense
GCTTCTCGTGTCTACTGCTGAAAAA 640 305 372 Antisense
AATGGCTCAACCACCGTATTTGACA 618 161 397 Antisense
TGACAGCGAAAGTTGCCGGCTCGAC 571 571 417 Antisense
CCGGCTCGACGATCTTGCAGAGTAC 518 265 432 Antisense
GCAGATGCTGGCTGCCAAGCAGGCT 556 311 459 Antisense
GCAGGCTCGGTGTAACGCAAACATC 478 309 477 Antisense
CAATCGACACGAAACTTTGCCTCCA 80 183 514 Antisense
ATTCCAGCTTTTGTCATCATTCTTC 604 7 544 Antisense
Sequence Source Affymetrix Proprietary Database