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[182403_at]

Description ZK418.7 /REP_DB=WormBase Gene ID /WP=CE00809 /TR=Q23485 /GB=AAA50691.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 20      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 61      6grp_total > 41      4grp_total > 31      6grp_highest_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 361.8
(3)
P 		307.5
(-3)
P 		307.3
(-3)
P 		313.1
(-2.4)
P 		55
B 344.2
(1.2)
P 		285.6
(-1.9)
P 		265.5
(-3)
P 		377.3
(3)
P 		112
C 362.1
(3)
P 		220.5
(-3)
P 		232.2
(-2.5)
P 		271.7
(-0.8)
P 		142
avr 356
(3) 		271.2
(-2.8) 		268.3
(-3) 		320.7
(0.6) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 333
1 2 3 4 5 6 range
A 436.3
(2.4)
P 		393.5
(1.4)
P 		464
(3)
P 		454.3
(2.8)
P 		249.8
(-1.8)
P 		195.1
(-3)
P 		269
B 457.3
(1.6)
P 		353.3
(-0.4)
P 		527.9
(3)
P 		429.8
(1.1)
P 		230.6
(-2.8)
P 		222.8
(-3)
P 		305
C 401.8
(1.3)
P 		362.9
(0.3)
P 		434.3
(2)
P 		474.5
(3)
P 		256.1
(-2.2)
P 		222
(-3)
P 		253
avr 431.8
(2) 		369.9
(0.6) 		475.4
(3) 		452.9
(2.5) 		245.5
(-2.3) 		213.3
(-3) 		262
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 131.7
(3)
P 		66.8
(-1.5)
P 		80.3
(-0.6)
P 		45.8
(-3)
P 		86
B 109.8
(3)
P 		70.5
(-1.9)
P 		61.5
(-3)
P 		80.4
(-0.7)
P 		48
C 119.9
(3)
P 		63.4
(-1.6)
P 		80.9
(-0.2)
P 		45.8
(-3)
P 		74
avr 120.5
(3) 		66.9
(-2.1) 		74.2
(-1.4) 		57.3
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 80.4
(-0.9)
P 		140
(3)
P 		101
(0.5)
P 		115.2
(1.4)
P 		75.4
(-1.2)
P 		47.5
(-3)
P 		93
B 159.1
(3)
P 		117.6
(-0.3)
P 		128.2
(0.6)
P 		113.8
(-0.6)
P 		93.7
(-2.2)
P 		83.1
(-3)
P 		76
C 148.9
(3)
P 		110.7
(-0.1)
P 		110.5
(-0.1)
P 		95.4
(-1.3)
P 		82.9
(-2.3)
P 		74.3
(-3)
P 		75
avr 129.5
(3) 		122.8
(2.3) 		113.2
(1.4) 		108.1
(0.9) 		84
(-1.5) 		68.3
(-3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182403_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7939
Sequence Type Exemplar sequence
Representative Public ID ZK418.7 NCBI
Target Description ZK418.7 /REP_DB=WormBase Gene ID /WP=CE00809 /TR=Q23485 /GB=AAA50691.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066145(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066145 NCBI Caenorhabditis elegans ZK418.7 (ZK418.7) mRNA, complete cds. 11/11 None
SNAP00000003345 ENSEMBL cdna:SNAP chromosome:CEL140:III:7079002:7080635:-1 11/11 None
GENEFINDER00000003359 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7079002:7081643:-1 11/11 None
ZK418.7 ENSEMBL cdna:known chromosome:CEL140:III:7079002:7080713:-1 gene:ZK418.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7078999-7080711(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK418.7
Entrez Gene 191318 Entrez gene
SwissProt Q23485 EMBL-EBI
WormBase CE00809 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA50691 Hypothetical protein ZK418.7 [Caenorhabditis elegans] ref|NP_498546.1| ZK418.7 [Caenorhabditis elegans] 0.0
blast CAE70077 Hypothetical protein CBG16518 [Caenorhabditis briggsae] 0.0
blast CAE70076 Hypothetical protein CBG16517 [Caenorhabditis briggsae] 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.7E-6
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.7E-6
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.7E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498546.1 7 77-99,119-141,154-176,197-219,239-261,291-313,343-365
ZK418.7 7 77-99,119-141,154-176,197-219,239-261,291-313,343-365
SNAP00000003345 7 51-73,93-115,128-150,171-193,213-235,265-287,317-339
GENEFINDER00000003359 7 90-112,132-154,167-189,210-232,252-274,304-326,356-378
Sequence
Target Sequence 
>C. ELEGANS:182403_AT
actctcacacattgttggcttattattggattgatttggctgctttcggcagcttcatct
atatgcattggcctatggggagcaactcttttctacccagaatctgctccaatatcctgt
tcatttgagaaatgccaacaaccattagccataatcatagttgttggtttatctctatgt
tatggtacagtaattggtctttacattgcaatgatggcaagattacatcgtctcgttaga
aaatcttcaatgattcaagcacgatcaaattcaaatagtatgacagcaatgaaacgactt
ggattgaatatgatcacatttgcaattggaagtattcctattcttattgtttgtattgtt
gctcttgcaaatcttcgagagttatcatcattgggagaagggagtaaaggcccttgtaag
acttttttgcacagttctctctttgttgaagtggaaatcttggcaagtgtcgctgcaatt
gtttggctaattgcaatgataatcgatccagttataaacattttggctgataaaaagatg
cgtggattattcgccaaacagattaaccgggtctcacaacgaattcgccgagcttcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTCACACATTGTTGGCTTATTA 159 101 583 Antisense
GCTTTCGGCAGCTTCATCTATATGC 274 305 624 Antisense
GCATTGGCCTATGGGGAGCAACTCT 96 307 647 Antisense
CAACTCTTTTCTACCCAGAATCTGC 235 189 665 Antisense
CAGAATCTGCTCCAATATCCTGTTC 396 205 680 Antisense
GGCAAGATTACATCGTCTCGTTAGA 363 531 798 Antisense
GGCCCTTGTAAGACTTTTTTGCACA 385 541 991 Antisense
TTTGCACAGTTCTCTCTTTGTTGAA 2 669 1008 Antisense
GCAAGTGTCGCTGCAATTGTTTGGC 129 321 1045 Antisense
ACAGATTAACCGGGTCTCACAACGA 211 109 1140 Antisense
TCACAACGAATTCGCCGAGCTTCCA 28 629 1156 Antisense
Sequence Source Affymetrix Proprietary Database