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[182402_at] 7TM receptor, srbc family

Description F54B8.10 /REP_DB=WormBase Gene ID /WP=CE16112 /TR=O45566 /GB=CAB07630.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 27      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 7.1
(-3)
A 		92.8
(3)
A 		14.1
(-2.5)
A 		84.1
(2.4)
A 		86
B 34.1
(-0.4)
A 		60.4
(2)
A 		6.2
(-3)
A 		71.4
(3)
A 		65
C 11.1
(-2.9)
A 		43.5
(0.1)
A 		9.8
(-3)
A 		74.4
(3)
A 		65
avr 17.4
(-2.3) 		65.6
(2) 		10
(-3) 		76.6
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 17.4
(-0.9)
A 		42.2
(3)
A 		10.1
(-2.1)
A 		4.5
(-3)
A 		12.2
(-1.8)
A 		10.5
(-2)
A 		38
B 32.3
(0.4)
A 		2.7
(-3)
A 		48.3
(2.3)
A 		54.3
(3)
A 		25.6
(-0.3)
A 		6.4
(-2.6)
A 		52
C 5.1
(-3)
A 		17.5
(0.9)
A 		17.3
(0.9)
A 		12.5
(-0.6)
A 		24.1
(3)
A 		5
(-3)
A 		19
avr 18.3
(0.7) 		20.8
(1.5) 		25.2
(3) 		23.8
(2.5) 		20.6
(1.5) 		7.3
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 2.6
(-3)
A 		20.1
(3)
A 		3.7
(-2.6)
A 		12.3
(0.3)
A 		18
B 10.9
(1.1)
A 		14.9
(2.9)
A 		1.4
(-3)
A 		15.2
(3)
A 		14
C 3.7
(-2.8)
A 		12.5
(3)
A 		3.4
(-3)
A 		12.5
(3)
A 		9
avr 5.7
(-1.7) 		15.8
(3) 		2.8
(-3) 		13.3
(1.8) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.2
(-2.1)
A 		15
(3)
A 		2.2
(-2.5)
A 		1.1
(-3)
A 		3.7
(-1.9)
A 		2.6
(-2.4)
A 		14
B 11.2
(1.6)
A 		0.9
(-3)
A 		11.7
(1.8)
A 		14.4
(3)
A 		10.4
(1.2)
A 		2.4
(-2.3)
A 		14
C 1.9
(-2.8)
A 		5.3
(0.5)
A 		4.4
(-0.3)
A 		2.5
(-2.2)
A 		7.8
(3)
A 		1.7
(-3)
A 		6
avr 5.4
(0.8) 		7.1
(2.8) 		6.1
(1.6) 		6
(1.5) 		7.3
(3) 		2.2
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182402_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14578
Sequence Type Exemplar sequence
Representative Public ID F54B8.10 NCBI
Target Description F54B8.10 /REP_DB=WormBase Gene ID /WP=CE16112 /TR=O45566 /GB=CAB07630.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074554(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074554 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-52) (srbc-52) mRNA, complete cds. 11/11 None
F54B8.10 ENSEMBL cdna:known chromosome:CEL140:V:15830407:15831466:1 gene:F54B8.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15830406-15831466(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-52
Ensembl F54B8.10
Entrez Gene 186207 Entrez gene
SwissProt O45566 EMBL-EBI
WormBase CE16112 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07630 Hypothetical protein F54B8.10 [Caenorhabditis elegans] ref|NP_506955.1| Serpentine Receptor, class BC (class B-like) family member (srbc-52) [Caenorhabditis elegans] 1.0E-152
blast CAB07629 Hypothetical protein F54B8.9 [Caenorhabditis elegans] ref|NP_506954.1| Serpentine Receptor, class BC (class B-like) family member (srbc-51) [Caenorhabditis elegans] 1.0E-109
blast CAB07632 Hypothetical protein F54B8.11 [Caenorhabditis elegans] ref|NP_506957.1| Serpentine Receptor, class BC (class B-like) family member (srbc-54) [Caenorhabditis elegans] 2.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.3E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506955.1 7 10-32,53-75,80-102,123-145,178-195,215-237,247-269
F54B8.10 7 10-32,53-75,80-102,123-145,178-195,215-237,247-269
Sequence
Target Sequence 
>C. ELEGANS:182402_AT
ggcactctacctattatgcccaacattattatgctcaacagtgcgtgccacccttgcatt
tttgatttctttcgataaagttttggcctcaattttcccgatcttacatcataatcatcg
ccgcaaaatccgtaattcacatattcttctcttggttttttgtagcgcatttttcgatca
gtacattttatttgggtactgcgaaaatgttattgatgttccactggagtgtgacacctt
ctcatgtagtgttaatcagtgttatcaggattattgggtagtccatgatcagttgtttta
ttttctaattggagcggcatctattttattattttttcgactttgtatatggaatcattg
tgccacgacacaatccaatctgttgctctccagagctactcaaattgcactgctcgatgc
tttcatgactttaattttcaatattattccattattcgtgtatgcaaattttccttcaat
caatttgaaaacggtcgggccaatgacatctgtctcgaaaactgctggatgccttattga
gtcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCACTCTACCTATTATGCCCAACA 486 533 252 Antisense
CTCAATTTTCCCGATCTTACATCAT 529 227 339 Antisense
AATCATCGCCGCAAAATCCGTAATT 351 171 364 Antisense
CATATTCTTCTCTTGGTTTTTTGTA 22 215 391 Antisense
GAGTGTGACACCTTCTCATGTAGTG 133 401 478 Antisense
GCCACGACACAATCCAATCTGTTGC 499 279 613 Antisense
AATCTGTTGCTCTCCAGAGCTACTC 641 165 628 Antisense
TGCACTGCTCGATGCTTTCATGACT 544 577 657 Antisense
AACGGTCGGGCCAATGACATCTGTC 324 143 741 Antisense
GACATCTGTCTCGAAAACTGCTGGA 599 369 756 Antisense
CTGCTGGATGCCTTATTGAGTCGAT 424 237 773 Antisense
Sequence Source Affymetrix Proprietary Database