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[182401_at]

Description K02H8.1 /REP_DB=WormBase Gene ID /WP=CE11674 /TR=Q94250 /GB=AAB07587.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 109.5
(-3)
A 		155.4
(0.2)
A 		135.8
(-1.1)
A 		194.4
(3)
A 		85
B 97.6
(-3)
A 		138
(-0.5)
A 		108.7
(-2.3)
A 		196.1
(3)
P 		99
C 127.5
(-3)
A 		164.7
(3)
A 		129.4
(-2.7)
P 		151.5
(0.9)
M 		37
avr 111.5
(-3) 		152.7
(0.6) 		124.6
(-1.9) 		180.7
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 113.1
(0.8)
A 		124.5
(1.6)
P 		82.3
(-1.5)
A 		61.8
(-3)
A 		143.2
(3)
A 		79.4
(-1.7)
A 		81
B 133.8
(3)
A 		120.6
(2.3)
A 		18.9
(-3)
A 		82.7
(0.3)
A 		103.3
(1.4)
A 		71
(-0.3)
A 		115
C 113.7
(3)
M 		109.4
(2.4)
A 		97.4
(0.8)
A 		79.1
(-1.7)
A 		82.5
(-1.2)
A 		69.3
(-3)
A 		44
avr 120.2
(3) 		118.2
(2.8) 		66.2
(-3) 		74.5
(-2.1) 		109.7
(1.8) 		73.2
(-2.2) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 39.9
(3)
A 		33.7
(-0.3)
A 		35.5
(0.7)
A 		28.5
(-3)
A 		11
B 31.1
(-0.9)
A 		34.1
(0.2)
A 		25.2
(-3)
A 		41.8
(3)
P 		17
C 42.2
(1.6)
A 		47.4
(3)
A 		45.1
(2.4)
P 		25.5
(-3)
M 		22
avr 37.7
(2.4) 		38.4
(3) 		35.3
(0.1) 		31.9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 20.9
(-1.9)
A 		44.3
(3)
P 		17.9
(-2.5)
A 		15.7
(-3)
A 		43.2
(2.8)
A 		19.3
(-2.2)
A 		29
B 46.6
(3)
A 		40.1
(2.1)
A 		4.6
(-3)
A 		21.9
(-0.5)
A 		42
(2.3)
A 		26.5
(0.1)
A 		42
C 42.2
(3)
M 		33.4
(1)
A 		24.8
(-1)
A 		15.9
(-3)
A 		26.7
(-0.5)
A 		23.2
(-1.3)
A 		26
avr 36.6
(2.3) 		39.3
(3) 		15.8
(-3) 		17.8
(-2.5) 		37.3
(2.5) 		23
(-1.2) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182401_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17350
Sequence Type Exemplar sequence
Representative Public ID K02H8.1 NCBI
Target Description K02H8.1 /REP_DB=WormBase Gene ID /WP=CE11674 /TR=Q94250 /GB=AAB07587.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078345(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078345 NCBI Caenorhabditis elegans K02H8.1 (K02H8.1) mRNA, complete cds. 11/11 None
SNAP00000028385 ENSEMBL cdna:SNAP chromosome:CEL140:X:17003826:17008274:1 10/11 None
K02H8.1 ENSEMBL cdna:known chromosome:CEL140:X:17001644:17008274:1 gene:K02H8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000028387 5/11 Cross Hyb Matching Probes None
GENEFINDER00000028386 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17001643-17008274(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02H8.1
Entrez Gene 186912 Entrez gene
SwissProt Q94250 EMBL-EBI
WormBase CE11674 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601150_AT similar to muscleblind-like 1 isoform b cfa
CANINE:1593502_AT similar to muscleblind-like 1 isoform b cfa
CANINE:1588024_AT similar to muscleblind-like 1 isoform b cfa
CANINE_2:CFA.14497.1.A1_AT similar to muscleblind-like 1 isoform b cfa
CANINE_2:CFA.4480.1.S1_AT similar to muscleblind-like 1 isoform b cfa
CANINE_2:CFA.8586.1.S1_AT similar to muscleblind-like 1 isoform b cfa
CANINE_2:CFA.8586.2.S1_A_AT similar to muscleblind-like 1 isoform b cfa
CANINE_2:CFAAFFX.13619.1.S1_AT similar to muscleblind-like 1 isoform b cfa
CANINE_2:CFAAFFX.13624.1.S1_AT similar to muscleblind-like 1 isoform b cfa
CANINE_2:CFAAFFX.13627.1.S1_S_AT similar to muscleblind-like 1 isoform b cfa
DROSGENOME1:147360_AT muscleblind dm
DROSOPHILA_2:1636099_S_AT muscleblind dm
DROSOPHILA_2:1640686_S_AT muscleblind dm
DROSGENOME1:143809_AT muscleblind dm
DROSOPHILA_2:1631120_AT muscleblind dm
DROSOPHILA_2:1641114_AT muscleblind dm
DROSOPHILA_2:1639930_AT muscleblind dm
CHICKEN:GGA.4840.1.S1_AT muscleblind-like (Drosophila) gga
CHICKEN:GGAAFFX.12068.1.S1_S_AT muscleblind-like (Drosophila) gga
CHICKEN:GGAAFFX.6545.1.S1_X_AT muscleblind-like (Drosophila) gga
CHICKEN:GGAAFFX.6545.4.S1_X_AT muscleblind-like (Drosophila) gga
CHICKEN:GGAAFFX.6545.5.S1_S_AT muscleblind-like (Drosophila) gga
HG-U133_PLUS_2:201152_S_AT muscleblind-like (Drosophila) hs
HG-U133A:201152_S_AT muscleblind-like (Drosophila) hs
HG-U133A_2:201152_S_AT muscleblind-like (Drosophila) hs
HG-U133A:201151_S_AT muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:201151_S_AT muscleblind-like (Drosophila) hs
HG-U133A_2:201151_S_AT muscleblind-like (Drosophila) hs
HG-U133A:201153_S_AT muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:201153_S_AT muscleblind-like (Drosophila) hs
HG-U133A_2:201153_S_AT muscleblind-like (Drosophila) hs
HG-FOCUS:201153_S_AT muscleblind-like (Drosophila) hs
HU35KSUBA:RC_AA181911_AT muscleblind-like (Drosophila) hs
HU35KSUBC:RC_AA383877_AT muscleblind-like (Drosophila) hs
HU35KSUBC:RC_AA262821_AT muscleblind-like (Drosophila) hs
HU35KSUBC:RC_AA024840_AT muscleblind-like (Drosophila) hs
HU35KSUBD:RC_N38893_AT muscleblind-like (Drosophila) hs
U133_X3P:G10518339_3P_A_AT muscleblind-like (Drosophila) hs
U133_X3P:HS2.28578.3.S1_3P_S_AT muscleblind-like (Drosophila) hs
U133_X3P:HS2.28578.3.S1_3P_A_AT muscleblind-like (Drosophila) hs
U133_X3P:HS.326710.0.S1_3P_AT muscleblind-like (Drosophila) hs
U133_X3P:HS.28578.0.S2_3P_A_AT muscleblind-like (Drosophila) hs
U133_X3P:HS.28578.0.S1_3P_A_AT muscleblind-like (Drosophila) hs
U133_X3P:1555594_3P_A_AT muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:1555594_A_AT muscleblind-like (Drosophila) hs
HG-U133A_2:215663_AT muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:215663_AT muscleblind-like (Drosophila) hs
HG-U133A:215663_AT muscleblind-like (Drosophila) hs
HG-U95AV2:34306_AT muscleblind-like (Drosophila) hs
HU35KSUBB:RC_AA192244_AT Muscleblind-like (Drosophila) hs
HU35KSUBC:RC_AA157832_AT Muscleblind-like (Drosophila) hs
HU35KSUBD:RC_AA451700_AT Muscleblind-like (Drosophila) hs
U133_X3P:HS2.326710.1.S1_3P_AT Muscleblind-like (Drosophila) hs
U133_X3P:HS2.292645.1.A1_3P_AT Muscleblind-like (Drosophila) hs
U133_X3P:HS.85835.0.S1_3P_X_AT Muscleblind-like (Drosophila) hs
U133_X3P:HS.85835.0.S1_3P_AT Muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:1556657_AT Muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:1556658_A_AT Muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:1558111_AT Muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:232298_AT Muscleblind-like (Drosophila) hs
HG-U133B:232298_AT Muscleblind-like (Drosophila) hs
HG-U95B:42226_AT Muscleblind-like (Drosophila) hs
HG-U95B:42710_AT Muscleblind-like (Drosophila) hs
HG-U95B:42711_G_AT Muscleblind-like (Drosophila) hs
HG-U95C:60211_AT Muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:233015_AT Muscleblind-like (Drosophila) hs
HG-U133B:233015_AT Muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:235811_AT Muscleblind-like (Drosophila) hs
HG-U133B:235811_AT Muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:235879_AT Muscleblind-like (Drosophila) hs
HG-U133B:235879_AT Muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:236558_AT Muscleblind-like (Drosophila) hs
HG-U133B:236558_AT Muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:238558_AT Muscleblind-like (Drosophila) hs
HG-U133B:238558_AT Muscleblind-like (Drosophila) hs
HG-U133_PLUS_2:241681_AT Muscleblind-like (Drosophila) hs
HG-U133B:241681_AT Muscleblind-like (Drosophila) hs
HG-U95B:43157_AT Muscleblind-like (Drosophila) hs
HG-U95B:44225_AT Muscleblind-like (Drosophila) hs
HG-U95B:45583_AT Muscleblind-like (Drosophila) hs
HG-U95C:60963_AT Muscleblind-like (Drosophila) hs
HG-U95E:75929_AT Muscleblind-like (Drosophila) hs
HG-U95D:86953_AT Muscleblind-like (Drosophila) hs
HG-U95D:91507_AT Muscleblind-like (Drosophila) hs
HU35KSUBA:RC_AA456826_AT Muscleblind-like (Drosophila) hs
HU35KSUBB:RC_AA195283_AT Muscleblind-like (Drosophila) hs
HU35KSUBB:RC_H55748_AT Muscleblind-like (Drosophila) hs
HU35KSUBD:RC_AA411800_AT Muscleblind-like (Drosophila) hs
HU35KSUBD:RC_H61150_AT Muscleblind-like (Drosophila) hs
U133_X3P:HS.156933.0.A1_3P_AT Muscleblind-like (Drosophila) hs
U133_X3P:HS.189900.0.A1_3P_AT Muscleblind-like (Drosophila) hs
U133_X3P:HS.24605.0.A1_3P_AT Muscleblind-like (Drosophila) hs
U133_X3P:HS.282887.0.A1_3P_AT Muscleblind-like (Drosophila) hs
U133_X3P:HS.290306.0.S1_3P_AT Muscleblind-like (Drosophila) hs
U133_X3P:HS.310286.0.A1_3P_AT Muscleblind-like (Drosophila) hs
MG-U74AV2:96354_AT muscleblind-like 1 (Drosophila) mm
MOE430A:1416904_AT muscleblind-like 1 (Drosophila) mm
MOUSE430A_2:1416904_AT muscleblind-like 1 (Drosophila) mm
MOUSE430_2:1416904_AT muscleblind-like 1 (Drosophila) mm
MOE430B:1440315_AT muscleblind-like 1 (Drosophila) mm
MOUSE430_2:1440315_AT muscleblind-like 1 (Drosophila) mm
MOE430B:1457924_AT muscleblind-like 1 (Drosophila) mm
MOUSE430_2:1457924_AT muscleblind-like 1 (Drosophila) mm
MOE430B:1439686_AT Muscleblind-like 1 (Drosophila) (Mbnl1), mRNA mm
MOUSE430_2:1439686_AT Muscleblind-like 1 (Drosophila) (Mbnl1), mRNA mm
MOE430B:1445106_AT Muscleblind-like 1 (Drosophila) (Mbnl1), mRNA mm
MOUSE430_2:1445106_AT Muscleblind-like 1 (Drosophila) (Mbnl1), mRNA mm
MU19KSUBB:TC29984_AT Muscleblind-like 1 (Drosophila) (Mbnl1), mRNA mm
MU19KSUBB:TC33259_AT Muscleblind-like 1 (Drosophila) (Mbnl1), mRNA mm
MU19KSUBC:TC37938_AT Muscleblind-like 1 (Drosophila) (Mbnl1), mRNA mm
MU19KSUBC:TC39995_AT Muscleblind-like 1 (Drosophila) (Mbnl1), mRNA mm
RAE230B:1378942_AT Muscleblind-like 1 (Drosophila) rn
RAT230_2:1378942_AT Muscleblind-like 1 (Drosophila) rn
RAE230B:1379798_AT Muscleblind-like 1 (Drosophila) rn
RAT230_2:1379798_AT Muscleblind-like 1 (Drosophila) rn
RAE230B:1380213_AT Muscleblind-like 1 (Drosophila) rn
RAT230_2:1380213_AT Muscleblind-like 1 (Drosophila) rn
RAE230B:1397989_AT Muscleblind-like 1 (Drosophila) rn
RAT230_2:1397989_AT Muscleblind-like 1 (Drosophila) rn
RG-U34C:RC_AI234028_AT Muscleblind-like 1 (Drosophila) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB07587 Hypothetical protein K02H8.1 [Caenorhabditis elegans] ref|NP_510746.1| K02H8.1 [Caenorhabditis elegans] sp|Q94250|MBL_CAEEL Muscleblind-like protein 1.0E-151
blast CAE69703 Hypothetical protein CBG15968 [Caenorhabditis briggsae] 1.0E-122
blast AAB07587 Hypothetical protein K02H8.1 [Caenorhabditis elegans] ref|NP_510746.1| K02H8.1 [Caenorhabditis elegans] sp|Q94250|MBL_CAEEL Muscleblind-like protein 3.0E-85
blast CAE69703 Hypothetical protein CBG15968 [Caenorhabditis briggsae] 3.0E-77
blast AAO41357 CG33197-PD, isoform D [Drosophila melanogaster] ref|NP_788390.1| CG33197-PD, isoform D [Drosophila melanogaster] gb|AAC01949.1| Muscleblind isoform C [Drosophila melanogaster] 2.0E-42
blast XP_394234 PREDICTED: similar to Muscleblind isoform C [Apis mellifera] 4.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 6.1E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000028385 1 7-26
Sequence
Target Sequence 
>C. ELEGANS:182401_AT
tccatccaccacagcacattaaagatcagctactgataaatggaaggaatcacttggcgc
tgaagaatttgctctccgcacagcttaatcagactggaactccaatggttaatccaatga
tggctttagtgctcgactcaaatcaagaataccattcaccaccaactgacaaaaaaaacc
aacagctacaaactgccgccttgcttggcaacgtcggaggactgctttcggctcaatcgg
cggccgccttcatggccaactcgtcggcagcggctgcagcagcccaacaaacgccctcac
cgttgcttcgtctgcaaaggaaacgagcgctggaagaggagaacacgaatggcaacgata
tgacgtcagcagcagcggctcacacacaattgctctcattggccgcgggagctgtaccaa
tgaagcgaccaactctcgacaagaacggagcaatgttatactcaccggtagctcagcagg
cacaacaattcaacccatacctgttgcaaactcttcaaggatacgtgccagctgtctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCATCCACCACAGCACATTAAAGA 322 591 299 Antisense
CTCTCCGCACAGCTTAATCAGACTG 523 231 370 Antisense
GATGGCTTTAGTGCTCGACTCAAAT 686 405 417 Antisense
TGGCAACGTCGGAGGACTGCTTTCG 173 547 504 Antisense
TCACCGTTGCTTCGTCTGCAAAGGA 235 625 595 Antisense
CACACACAATTGCTCTCATTGGCCG 359 195 679 Antisense
GAAGCGACCAACTCTCGACAAGAAC 338 341 720 Antisense
TGTTATACTCACCGGTAGCTCAGCA 185 561 752 Antisense
GCAGGCACAACAATTCAACCCATAC 468 311 774 Antisense
CCCATACCTGTTGCAAACTCTTCAA 387 257 792 Antisense
TCAAGGATACGTGCCAGCTGTCTCT 404 633 813 Antisense
Sequence Source Affymetrix Proprietary Database