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[182400_at]

Description R05D11.7 /REP_DB=WormBase Gene ID /WP=CE06242 /TR=Q21739 /GB=CAA99894.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 66      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 81      6grp_total > 67      4grp_total > 24      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 178.1
(-1.8)
P 		206.1
(3)
P 		171.3
(-3)
P 		178.7
(-1.7)
P 		35
B 98.3
(-3)
P 		156.4
(0.2)
P 		146.1
(-0.4)
P 		208.7
(3)
P 		110
C 171.8
(-0)
P 		144.6
(-3)
P 		199.7
(3)
P 		176.3
(0.5)
P 		55
avr 149.4
(-3) 		169
(0.1) 		172.4
(0.6) 		187.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 245.4
(0.3)
P 		198.2
(-3)
P 		208.1
(-2.3)
P 		233.8
(-0.5)
P 		211.5
(-2.1)
P 		284.3
(3)
P 		86
B 178
(-3)
P 		244.7
(-1.5)
P 		287.9
(-0.6)
P 		203.1
(-2.4)
P 		251
(-1.4)
P 		451.7
(3)
P 		274
C 290.4
(-0.6)
P 		290.1
(-0.6)
P 		232
(-2.2)
P 		272.1
(-1.1)
P 		200.8
(-3)
P 		421.9
(3)
P 		221
avr 237.9
(-2.4) 		244.3
(-2.2) 		242.7
(-2.2) 		236.3
(-2.4) 		221.1
(-3) 		386
(3) 		165
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 64.8
(3)
P 		44.7
(-0.1)
P 		44.8
(-0.1)
P 		26.2
(-3)
P 		39
B 31.4
(-3)
P 		38.6
(0.3)
P 		33.9
(-1.9)
P 		44.5
(3)
P 		13
C 56.9
(1.1)
P 		41.6
(-1.2)
P 		69.6
(3)
P 		29.7
(-3)
P 		40
avr 51
(3) 		41.6
(-0.2) 		49.4
(2.5) 		33.5
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 45.2
(-3)
P 		70.5
(3)
P 		45.3
(-3)
P 		59.3
(0.3)
P 		63.8
(1.4)
P 		69.2
(2.7)
P 		25
B 61.9
(-2.6)
P 		81.4
(-1.6)
P 		69.9
(-2.2)
P 		53.8
(-3)
P 		102
(-0.5)
P 		168.4
(3)
P 		115
C 107.6
(0.7)
P 		88.5
(-0.7)
P 		59.1
(-2.7)
P 		54.7
(-3)
P 		65
(-2.3)
P 		141.2
(3)
P 		87
avr 71.6
(-1.7) 		80.1
(-0.9) 		58.1
(-2.8) 		55.9
(-3) 		76.9
(-1.2) 		126.3
(3) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182400_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1767
Sequence Type Exemplar sequence
Representative Public ID R05D11.7 NCBI
Target Description R05D11.7 /REP_DB=WormBase Gene ID /WP=CE06242 /TR=Q21739 /GB=CAA99894.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059926(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059926 NCBI Caenorhabditis elegans R05D11.7 (R05D11.7) mRNA, complete cds. 11/11 None
SNAP00000034022 ENSEMBL cdna:SNAP chromosome:CEL140:I:8609495:8610030:1 11/11 None
GENEFINDER00000034028 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8609495:8610030:1 11/11 None
R05D11.7 ENSEMBL cdna:known chromosome:CEL140:I:8609483:8610131:1 gene:R05D11.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8609425-8609961(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R05D11.7
Entrez Gene 172652 Entrez gene
SwissProt Q21739 EMBL-EBI
WormBase CE06242 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:247909_AT expressed protein at
CANINE_2:CFA.20902.1.S1_AT similar to putative nucleic acid binding protein RY-1 cfa
CANINE_2:CFAAFFX.5896.1.S1_AT similar to putative nucleic acid binding protein RY-1 cfa
CANINE_2:CFAAFFX.5896.1.S1_S_AT similar to putative nucleic acid binding protein RY-1 cfa
DROSOPHILA_2:1623384_AT yantar dm
DROSGENOME1:142235_AT yantar dm
HU35KSUBC:RC_AA043765_S_AT putative nucleic acid binding protein RY-1 hs
HUGENEFL:X76302_AT putative nucleic acid binding protein RY-1 hs
U133_X3P:HS.54649.0.S2_3P_AT putative nucleic acid binding protein RY-1 hs
U133_X3P:HS.54649.0.S1_3P_AT putative nucleic acid binding protein RY-1 hs
HG-U133A_2:212438_AT putative nucleic acid binding protein RY-1 hs
HG-U133_PLUS_2:212438_AT putative nucleic acid binding protein RY-1 hs
HG-U133A:212438_AT putative nucleic acid binding protein RY-1 hs
HG-U133A_2:212440_AT putative nucleic acid binding protein RY-1 hs
HG-U133_PLUS_2:212440_AT putative nucleic acid binding protein RY-1 hs
HG-U133A:212440_AT putative nucleic acid binding protein RY-1 hs
HG-U95AV2:35286_R_AT putative nucleic acid binding protein RY-1 hs
HG-U95C:63184_AT Putative nucleic acid binding protein RY-1 hs
MOE430A:1415714_A_AT RIKEN cDNA 2610209M04 gene mm
MOE430B:1415714_A_AT RIKEN cDNA 2610209M04 gene mm
MOUSE430A_2:1415714_A_AT RIKEN cDNA 2610209M04 gene mm
MOUSE430_2:1415714_A_AT RIKEN cDNA 2610209M04 gene mm
MU11KSUBA:AA185259_S_AT RIKEN cDNA 2610209M04 gene mm
MG-U74AV2:99651_AT RIKEN cDNA 2610209M04 gene mm
MG-U74AV2:161236_R_AT RIKEN cDNA 2610209M04 gene mm
MOE430A:1460697_S_AT RIKEN cDNA 2610209M04 gene mm
MOUSE430A_2:1460697_S_AT RIKEN cDNA 2610209M04 gene mm
MOUSE430_2:1460697_S_AT RIKEN cDNA 2610209M04 gene mm
MU19KSUBA:TC25638_AT RIKEN cDNA 2610209M04 gene, mRNA (cDNA clone MGC:41429 IMAGE:3468252) mm
MU19KSUBC:TC40229_S_AT RIKEN cDNA 2610209M04 gene, mRNA (cDNA clone MGC:41429 IMAGE:3468252) mm
RG-U34B:RC_AI010483_AT similar to putative nucleic acid binding protein RY-1; EST AI449063 (predicted) rn
RAE230A:1373563_AT similar to putative nucleic acid binding protein RY-1; EST AI449063 (predicted) rn
RAT230_2:1373563_AT similar to putative nucleic acid binding protein RY-1; EST AI449063 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA99894 Hypothetical protein R05D11.7 [Caenorhabditis elegans] ref|NP_492327.1| R05D11.7 [Caenorhabditis elegans] 1.0E-20
blast CAE67096 Hypothetical protein CBG12507 [Caenorhabditis briggsae] 6.0E-19
Sequence
Target Sequence 
>C. ELEGANS:182400_AT
gggacgtgacagaagtcgcagtcgcgataggaagagacgatccagatcaagatcagtgga
aagaaggcgagaacgaagtagaagtcgtgaacgtcgagatgctcgcaaaaatcgcgacga
aaaagaaaagagaagcagtcgaagcagaagtccgcgcgataaacgagatcggcgggaaag
aagtcgatcacgggatcgaaaagaacgtgatcgtgaacgacaaaaaaaggatcgtgagcc
aaagaaacgagagaaacaagaggagatcagtctagagtcgttacaaagtggagcagacga
tgaagcgatgatggctgcaatgggatttggtggattcgatacaactaaaaataaacaggt
caatgacaacgtggatggctgcgtgaacatcaagaaacctcgcagataccgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGACGTGACAGAAGTCGCAGTCGC 232 495 15 Antisense
GTCGCAGTCGCGATAGGAAGAGACG 674 473 29 Antisense
AGTCGTGAACGTCGAGATGCTCGCA 565 59 97 Antisense
AGCAGTCGAAGCAGAAGTCCGCGCG 379 77 148 Antisense
GTCCGCGCGATAAACGAGATCGGCG 33 477 164 Antisense
GGAGATCAGTCTAGAGTCGTTACAA 443 517 276 Antisense
GACGATGAAGCGATGATGGCTGCAA 136 379 310 Antisense
GGCTGCAATGGGATTTGGTGGATTC 34 541 327 Antisense
GGTCAATGACAACGTGGATGGCTGC 433 503 372 Antisense
GTGGATGGCTGCGTGAACATCAAGA 607 489 385 Antisense
TCAAGAAACCTCGCAGATACCGCCA 634 631 404 Antisense
Sequence Source Affymetrix Proprietary Database