[Home] | [Total List]

[182399_s_at]

Description T27D12.4 /REP_DB=WormBase Gene ID /WP=CE26472 /TR=Q9GNA9 /GB=CAC15861.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 44      4grp_high_8_8 > 08      6grp_total > 0      4grp_total > 55      6grp_total_sub > Hat      6grp_cgc > 54      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 292.5
(3)
P 		194.7
(-2.7)
A 		277.8
(2.1)
M 		190
(-3)
P 		103
B 211.7
(3)
P 		150.1
(-3)
P 		156.1
(-2.4)
P 		187.7
(0.7)
P 		62
C 231.3
(-0.7)
P 		211.5
(-3)
P 		229.9
(-0.9)
P 		264
(3)
P 		53
avr 245.2
(3) 		185.4
(-3) 		221.3
(0.6) 		213.9
(-0.1) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 215.7
(-0.9)
P 		285.7
(3)
P 		204
(-1.5)
P 		177
(-3)
P 		187.7
(-2.4)
P 		235.7
(0.2)
P 		109
B 167.8
(-2.1)
P 		259
(3)
P 		152.2
(-3)
P 		180.7
(-1.4)
P 		206.8
(0.1)
P 		192.6
(-0.7)
P 		107
C 177.5
(-1.1)
P 		264.2
(3)
P 		245.4
(2.1)
P 		187.5
(-0.6)
M 		136.9
(-3)
P 		236.6
(1.7)
P 		127
avr 187
(-2.4) 		269.6
(3) 		200.5
(-1.5) 		181.7
(-2.7) 		177.1
(-3) 		221.6
(-0.1) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 106.5
(3)
P 		42.3
(-1.9)
A 		72.6
(0.4)
M 		27.8
(-3)
P 		79
B 67.5
(3)
P 		37.1
(-2.8)
P 		36.2
(-3)
P 		40
(-2.3)
P 		31
C 76.6
(2.4)
P 		60.8
(-0.3)
P 		80.1
(3)
P 		44.5
(-3)
P 		36
avr 83.5
(3) 		46.7
(-1.8) 		63
(0.3) 		37.4
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 39.8
(-3)
P 		101.6
(3)
P 		44.4
(-2.6)
P 		44.9
(-2.5)
P 		56.6
(-1.4)
P 		57.4
(-1.3)
P 		62
B 58.4
(-0.4)
P 		86.2
(3)
P 		37
(-3)
P 		47.9
(-1.7)
P 		84
(2.7)
P 		71.8
(1.2)
P 		49
C 65.8
(0.9)
P 		80.6
(3)
P 		62.4
(0.5)
P 		37.7
(-3)
M 		44.3
(-2.1)
P 		79.2
(2.8)
P 		43
avr 54.7
(-1.5) 		89.5
(3) 		47.9
(-2.4) 		43.5
(-3) 		61.6
(-0.6) 		69.5
(0.4) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182399_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3636
Sequence Type Exemplar sequence
Representative Public ID T27D12.4 NCBI
Target Description T27D12.4 /REP_DB=WormBase Gene ID /WP=CE26472 /TR=Q9GNA9 /GB=CAC15861.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064126(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064126 NCBI Caenorhabditis elegans Patterned Expression Site family member (pes-5) (pes-5) mRNA, complete cds. 11/11 None
T27D12.4 ENSEMBL cdna:known chromosome:CEL140:II:11827904:11829491:-1 gene:T27D12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11827944-11829452(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pes-5
Ensembl T27D12.4
Entrez Gene 174819 Entrez gene
SwissProt Q9GNA9 EMBL-EBI
WormBase CE26472 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC15861 Hypothetical protein T27D12.4 [Caenorhabditis elegans] emb|CAC15867.1| Hypothetical protein T27D12.4 [Caenorhabditis elegans] ref|NP_496527.1| Patterned Expression Site family member (pes-5) [Caenorhabditis elegans] 0.0
blast CAB60580 Hypothetical protein Y6D1A.1 [Caenorhabditis elegans] ref|NP_496526.1| Y6D1A.1 [Caenorhabditis elegans] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:182399_S_AT
ctgcacgccatccaaactttgaggacagatatccacagccaccaagcgacaactacacac
cgatgcgatctctaaaaagtcctgaaattgatccaattgatttcgaccgcttacgaatcg
aattgctgaagcctgaaccagtgtacgtatatcgtcgtcaactagaaccaatcccaaatc
agcagaataatgtcatcgacaacgaaccatgggtccccgacaccgcccaagccaacgatg
tcccgagttgcctcttccacacgaacggctacaagaacgccatcaaatcccgtcctatgc
gagaaatttgcaatgaaagctacgtcaatcggaagatcagacgcccgtgtgttttctgca
acaagcagcactctgtggatgaatgtcatgaaataacgaatgtggagaagcgaagagagt
ttctggaagatgcgggaatctgcaccagatgtcttggaaggcattccattcggaattgtt
tcaatcgagcgcattatgaatgcgattattgtagtgatgaggatcctgatgttgagcctc
accactcgtgtttatgtccactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCACGCCATCCAAACTTTGAGGA 82 237 695 Antisense
TGAGGACAGATATCCACAGCCACCA 682 567 714 Antisense
GACAACTACACACCGATGCGATCTC 417 365 742 Antisense
TGATCCAATTGATTTCGACCGCTTA 659 565 783 Antisense
GCCTGAACCAGTGTACGTATATCGT 186 283 825 Antisense
ATCGTCGTCAACTAGAACCAATCCC 529 35 845 Antisense
CCAAGCCAACGATGTCCCGAGTTGC 654 275 921 Antisense
CTCTTCCACACGAACGGCTACAAGA 664 229 946 Antisense
ATCAAATCCCGTCCTATGCGAGAAA 394 27 976 Antisense
GAAGATCAGACGCCCGTGTGTTTTC 584 337 1026 Antisense
TCACCACTCGTGTTTATGTCCACTG 559 625 1233 Antisense
Sequence Source Affymetrix Proprietary Database