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[182397_at] 7TM receptor, srbc family

Description C31A11.3 /REP_DB=WormBase Gene ID /WP=CE15654 /TR=O45280 /GB=CAB05685.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 20      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 35.9
(-0.7)
A 		16.6
(-2.1)
A 		4.6
(-3)
A 		85.2
(3)
P 		81
B 28.4
(-1.5)
A 		44
(3)
A 		23.4
(-3)
A 		42.7
(2.6)
A 		21
C 24.8
(-0.5)
A 		36.9
(2.7)
A 		15.2
(-3)
A 		38.2
(3)
A 		23
avr 29.7
(-0.8) 		32.5
(-0.4) 		14.4
(-3) 		55.4
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 68.8
(3)
A 		5.9
(-2.7)
A 		57.3
(2)
P 		5.3
(-2.8)
A 		32.4
(-0.3)
A 		2.8
(-3)
A 		66
B 9.6
(-2)
A 		28.8
(1.1)
A 		23.2
(0.2)
A 		40.6
(3)
M 		16.5
(-0.9)
A 		3.5
(-3)
A 		37
C 2.6
(-3)
A 		45
(1.9)
P 		18.9
(-1.1)
A 		54.9
(3)
A 		23.5
(-0.6)
A 		24.7
(-0.5)
A 		52
avr 27
(1.3) 		26.6
(1.2) 		33.1
(2.9) 		33.6
(3) 		24.1
(0.6) 		10.3
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.1
(3)
A 		3.6
(-1.8)
A 		1.2
(-3)
A 		12.5
(2.7)
P 		12
B 9
(0.9)
A 		10.9
(3)
A 		5.4
(-3)
A 		9.1
(1)
A 		6
C 8.2
(0.3)
A 		10.6
(3)
A 		5.3
(-3)
A 		6.4
(-1.8)
A 		5
avr 10.1
(3) 		8.4
(1.3) 		4
(-3) 		9.3
(2.2) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 12.7
(3)
A 		2.1
(-2.3)
A 		12.5
(2.9)
P 		1.3
(-2.7)
A 		9.8
(1.6)
A 		0.7
(-3)
A 		12
B 3.4
(-1.7)
A 		9.6
(2.2)
A 		5.6
(-0.3)
A 		10.8
(3)
M 		6.7
(0.4)
A 		1.3
(-3)
A 		10
C 1
(-3)
A 		13.7
(3)
P 		4.8
(-1.2)
A 		11
(1.7)
A 		7.6
(0.1)
A 		8.3
(0.4)
A 		13
avr 5.7
(-0.3) 		8.5
(3) 		7.6
(1.9) 		7.7
(2.1) 		8
(2.4) 		3.4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182397_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13552
Sequence Type Exemplar sequence
Representative Public ID C31A11.3 NCBI
Target Description C31A11.3 /REP_DB=WormBase Gene ID /WP=CE15654 /TR=O45280 /GB=CAB05685.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028520(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028520 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-84) (srbc-84) mRNA, complete cds. 9/11 None
C31A11.10 ENSEMBL cdna:known chromosome:CEL140:V:16301552:16302445:1 gene:C31A11.10 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16300189-16302445(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-84
Ensembl C31A11.10
Entrez Gene 3565276 Entrez gene
SwissProt Q5CZ34 EMBL-EBI
WormBase CE38038 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI58632 Hypothetical protein C31A11.10 [Caenorhabditis elegans] ref|NP_001023691.1| Serpentine Receptor, class BC (class B-like) family member (srbc-84) [Caenorhabditis elegans] 1.0E-153
blast CAB05686 Hypothetical protein C31A11.4 [Caenorhabditis elegans] ref|NP_507117.1| Serpentine Receptor, class BC (class B-like) family member (srbc-82) [Caenorhabditis elegans] 1.0E-110
blast CAB05685 Hypothetical protein C31A11.3 [Caenorhabditis elegans] ref|NP_507116.2| Serpentine Receptor, class BC (class B-like) family member (srbc-83) [Caenorhabditis elegans] 8.0E-84
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 2.9E-94
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023691.1 7 10-32,44-66,81-103,123-145,177-196,208-230,240-262
C31A11.10 7 10-32,44-66,81-103,123-145,177-196,208-230,240-262
Sequence
Target Sequence 
>C. ELEGANS:182397_AT
gcacacctctaactttctatttgatttggatatcctcatcttttggtagtttacgagcga
ccgttgccctttcgatatcaatcgagagagccgtggccactttattcccaattttctact
acaattatcgacaaaaccttttaaattgttttgtatggtttttcataatatgtattgttt
caattgatcaatatattcttttcggagtttgtgacgttgttatagacaccccgctagact
gtgacagtttcctgtgtgccatgaaccagtgttacactacatattggttattacatgaac
gaattactaccttttccaatgtatttttttctgcggttgttacttttcgattgtttattt
ggaatcattttttcagtacccaatggaaggctacagaaacttttcaggccacccgtattg
cacttttcgatgcttttattgtaatagttttctatgctgttccctactttatttttgctc
atgtatacactatatattctaatatagctggatcattgacacttgcgacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACACCTCTAACTTTCTATTTGAT 250 231 611 Antisense
GATATCCTCATCTTTTGGTAGTTTA 538 425 639 Antisense
TGGTAGTTTACGAGCGACCGTTGCC 516 541 654 Antisense
TGGCCACTTTATTCCCAATTTTCTA 385 543 704 Antisense
CAGTTTCCTGTGTGCCATGAACCAG 282 207 855 Antisense
GAACGAATTACTACCTTTTCCAATG 537 343 907 Antisense
TTCTGCGGTTGTTACTTTTCGATTG 584 693 939 Antisense
GCTACAGAAACTTTTCAGGCCACCC 41 301 1000 Antisense
ACCCGTATTGCACTTTTCGATGCTT 8 91 1021 Antisense
AATAGTTTTCTATGCTGTTCCCTAC 189 173 1053 Antisense
GCTGGATCATTGACACTTGCGACAA 366 295 1117 Antisense
Sequence Source Affymetrix Proprietary Database