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[182396_at]

Description F14F9.2 /REP_DB=WormBase Gene ID /WP=CE09388 /TR=Q9GUC5 /GB=AAF98616.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 599
1 2 3 4 range
A 18.3
(-2.9)
A 		6.1
(-3)
A 		19.7
(-2.9)
A 		602.2
(3)
P 		596
B 37
(-2.8)
A 		22.9
(-3)
A 		32
(-2.9)
A 		523.9
(3)
P 		501
C 21.9
(-2.8)
A 		19.6
(-2.8)
A 		3.5
(-3)
A 		505.1
(3)
P 		502
avr 25.7
(-2.9) 		16.2
(-3) 		18.4
(-3) 		543.7
(3) 		528

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2169
1 2 3 4 5 6 range
A 54.4
(-2.9)
A 		5.2
(-3)
A 		34.3
(-2.9)
A 		70.3
(-2.8)
A 		205.5
(-2.4)
P 		2173.9
(3)
P 		2169
B 25.8
(-2.9)
A 		34.9
(-2.9)
A 		6.5
(-3)
A 		50.4
(-2.9)
A 		265.7
(-2.2)
P 		1875.9
(3)
P 		1869
C 22.9
(-3)
A 		54.1
(-2.9)
A 		27.8
(-3)
A 		62
(-2.9)
A 		287.4
(-2.2)
P 		1997.2
(3)
P 		1974
avr 34.4
(-3) 		31.4
(-3) 		22.9
(-3) 		60.9
(-2.9) 		252.9
(-2.3) 		2015.7
(3) 		1993
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 6.7
(-2.6)
A 		1.3
(-3)
A 		5.2
(-2.7)
A 		88.2
(3)
P 		87
B 11.8
(-2.7)
A 		5.7
(-3)
A 		7.4
(-2.9)
A 		111.6
(3)
P 		106
C 7.2
(-2.6)
A 		5.6
(-2.7)
A 		1.2
(-3)
A 		85.2
(3)
P 		84
avr 8.6
(-2.7) 		4.2
(-3) 		4.6
(-3) 		95
(3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 698
1 2 3 4 5 6 range
A 10
(-2.9)
A 		1.9
(-3)
A 		7.5
(-2.9)
A 		17.8
(-2.8)
A 		62
(-2.3)
P 		529.3
(3)
P 		527
B 9
(-2.9)
A 		11.6
(-2.9)
A 		1.6
(-3)
A 		13.3
(-2.9)
A 		107.9
(-2.1)
P 		699.5
(3)
P 		698
C 8.5
(-3)
A 		16.5
(-2.9)
A 		7.1
(-3)
A 		12.5
(-3)
A 		93
(-2.2)
P 		668.6
(3)
P 		662
avr 9.2
(-3) 		10
(-3) 		5.4
(-3) 		14.5
(-2.9) 		87.6
(-2.2) 		632.5
(3) 		627
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182396_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15387
Sequence Type Exemplar sequence
Representative Public ID F14F9.2 NCBI
Target Description F14F9.2 /REP_DB=WormBase Gene ID /WP=CE09388 /TR=Q9GUC5 /GB=AAF98616.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071976(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071976 NCBI Caenorhabditis elegans F14F9.2 (F14F9.2) mRNA, complete cds. 11/11 None
SNAP00000039410 ENSEMBL cdna:SNAP chromosome:CEL140:V:5144654:5145594:1 11/11 None
GENEFINDER00000039420 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5144654:5145594:1 11/11 None
F14F9.2 ENSEMBL cdna:known chromosome:CEL140:V:5144654:5145594:1 gene:F14F9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5144653-5145594(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F14F9.2
Entrez Gene 184484 Entrez gene
SwissProt Q9GUC5 EMBL-EBI
WormBase CE09388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504377 F14F9.2 [Caenorhabditis elegans] gb|AAF98616.1| Hypothetical protein F14F9.2 [Caenorhabditis elegans] 1.0E-130
Sequence
Target Sequence 
>C. ELEGANS:182396_AT
gatcagattctcctgttatcgggtcagaaggctccgatgaatctcaaacagaatcagcag
gagatgtctcagatgattcttttatcggatcagaagctcctgtggaatctcaaacagaac
cagcagaagatagatcagatgctccttttatcggatcagatggtcctttcatcgggtcag
aagctcctttcattggaacagaagctctcgctgaatctcaaacagaattagcaggagatg
tctcagatggttcttttatcgtatcagaagctcctgtggaatcacaaaccgaatcaggag
aagatagatcagatgattctttcatcgggtcagaagctcctttcatcggatcagaagctc
ctgtagaatcgaacacagaatcggaagaaaattcacacgaagattccgatgagcctgaac
actctgacagccatgaaaacgatcactattccccaccagagattgactcatcagatgacc
cggtgctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGATTCTCCTGTTATCGGGTC 332 421 281 Antisense
GGGTCAGAAGGCTCCGATGAATCTC 458 497 301 Antisense
TCAGATGCTCCTTTTATCGGATCAG 515 623 415 Antisense
TCAGATGGTCCTTTCATCGGGTCAG 429 623 436 Antisense
GAACAGAAGCTCTCGCTGAATCTCA 541 351 476 Antisense
TCTTTCATCGGGTCAGAAGCTCCTT 554 613 598 Antisense
AAGCTCCTTTCATCGGATCAGAAGC 91 149 614 Antisense
ATGAGCCTGAACACTCTGACAGCCA 296 45 689 Antisense
ATGAAAACGATCACTATTCCCCACC 325 43 713 Antisense
CTATTCCCCACCAGAGATTGACTCA 404 223 726 Antisense
ACTCATCAGATGACCCGGTGCTAAT 704 97 746 Antisense
Sequence Source Affymetrix Proprietary Database