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[182395_at]

Description E02A10.2 /REP_DB=WormBase Gene ID /WP=CE09116 /TR=Q93424 /GB=CAB02877.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 02      6grp_cgc > 87      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1347
1 2 3 4 range
A 9.1
(-3)
A 		4.6
(-3)
A 		7.4
(-3)
A 		950.4
(3)
P 		946
B 27.1
(-2.9)
A 		14.2
(-3)
A 		17
(-3)
A 		1349.6
(3)
P 		1335
C 23.3
(-2.9)
A 		2.7
(-3)
A 		8.6
(-3)
A 		840.9
(3)
P 		838
avr 19.8
(-2.9) 		7.2
(-3) 		11
(-3) 		1047
(3) 		1040

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17427
1 2 3 4 5 6 range
A 12.6
(-3)
A 		2.4
(-3)
A 		43.7
(-3)
A 		15142
(2.8)
P 		15713.6
(3)
P 		6621.5
(-0.5)
P 		15711
B 2.7
(-3)
A 		8.5
(-3)
A 		54.6
(-3)
A 		11995.6
(1.9)
P 		14555.1
(3)
P 		6613.4
(-0.3)
P 		14552
C 2.7
(-3)
A 		1.8
(-3)
A 		67.3
(-3)
A 		9949
(0.4)
P 		17428.7
(3)
P 		5994.5
(-0.9)
P 		17427
avr 6
(-3) 		4.2
(-3) 		55.2
(-3) 		12362.2
(1.7) 		15899.1
(3) 		6409.8
(-0.6) 		15895
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 3.3
(-2.9)
A 		1
(-3)
A 		1.9
(-3)
A 		139.1
(3)
P 		138
B 8.6
(-2.9)
A 		3.5
(-3)
A 		3.9
(-3)
A 		287.6
(3)
P 		284
C 7.7
(-2.7)
A 		0.8
(-3)
A 		3
(-2.9)
A 		141.8
(3)
P 		141
avr 6.5
(-2.8) 		1.8
(-3) 		2.9
(-3) 		189.5
(3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5913
1 2 3 4 5 6 range
A 2.3
(-3)
A 		0.8
(-3)
A 		9.5
(-3)
A 		3840.4
(1.9)
P 		4741.7
(3)
P 		1612.1
(-1)
P 		4741
B 0.9
(-3)
A 		2.8
(-3)
A 		13.2
(-3)
A 		3177.2
(0.2)
P 		5913.6
(3)
P 		2466.1
(-0.5)
P 		5913
C 1
(-3)
A 		0.5
(-3)
A 		17.1
(-3)
A 		2000.7
(-0.9)
P 		5639.7
(3)
P 		2006.7
(-0.9)
P 		5639
avr 1.4
(-3) 		1.4
(-3) 		13.3
(-3) 		3006.1
(0.3) 		5431.7
(3) 		2028.3
(-0.8) 		5430
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182395_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14352
Sequence Type Exemplar sequence
Representative Public ID E02A10.2 NCBI
Target Description E02A10.2 /REP_DB=WormBase Gene ID /WP=CE09116 /TR=Q93424 /GB=CAB02877.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073745(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073745 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-23) (grl-23) mRNA, complete cds. 11/11 None
SNAP00000035820 ENSEMBL cdna:SNAP chromosome:CEL140:V:12577896:12579483:-1 11/11 None
GENEFINDER00000035824 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12577896:12579483:-1 11/11 None
E02A10.2 ENSEMBL cdna:known chromosome:CEL140:V:12577896:12579483:-1 gene:E02A10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12577895-12579483(-) 53.02 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-23
Ensembl E02A10.2
Entrez Gene 183983 Entrez gene
SwissProt Q93424 EMBL-EBI
WormBase CE09116 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1633409_A_AT dm
DROSGENOME1:143296_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB02877 Hypothetical protein E02A10.2 [Caenorhabditis elegans] ref|NP_506146.1| GRound-Like (grd related) family member (grl-23) [Caenorhabditis elegans] 5.0E-35
blast CAB02877 Hypothetical protein E02A10.2 [Caenorhabditis elegans] ref|NP_506146.1| GRound-Like (grd related) family member (grl-23) [Caenorhabditis elegans] 6.0E-35
blast CAE75515 Hypothetical protein CBG23530 [Caenorhabditis briggsae] 5.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 1.6E-18
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 1.6E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506146.1 1 5-27
E02A10.2 1 5-27
SNAP00000035820 1 5-27
GENEFINDER00000035824 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:182395_AT
gaggatgcggtggtggatgtggacgcaagaagagagaagccatcaatgttgttggacacg
atgatcttaacaaatgcaacaacgaagagctccgtatcattctcaacgagaacaccaagg
aaaccgtcgctgaatctatcaagaccctcaaggagaaggtcgctggccaagactacattg
ttgtctgtaacgagaagccagctccattcaccgctgagacggacgacttctgctcacttc
aaaaagagaatgttcactgcacaatccttagaatcaaccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGATGCGGTGGTGGATGTGGACG 629 403 563 Antisense
GAAGAGCTCCGTATCATTCTCAACG 31 339 646 Antisense
GAACACCAAGGAAACCGTCGCTGAA 442 351 672 Antisense
GTCGCTGAATCTATCAAGACCCTCA 395 475 688 Antisense
ACCCTCAAGGAGAAGGTCGCTGGCC 96 81 706 Antisense
GGTCGCTGGCCAAGACTACATTGTT 298 503 720 Antisense
GTAACGAGAAGCCAGCTCCATTCAC 466 461 749 Antisense
CTCCATTCACCGCTGAGACGGACGA 604 233 764 Antisense
ACCGCTGAGACGGACGACTTCTGCT 512 87 772 Antisense
AGAGAATGTTCACTGCACAATCCTT 310 59 807 Antisense
TGCACAATCCTTAGAATCAACCATA 294 577 820 Antisense
Sequence Source Affymetrix Proprietary Database