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[182394_at]

Description F10A3.11 /REP_DB=WormBase Gene ID /WP=CE15776 /TR=O45342 /GB=CAB07347.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 8.1
(-3)
A 		23.1
(-0.3)
A 		37.2
(2.2)
A 		41.7
(3)
A 		34
B 7.5
(3)
A 		6.1
(-1.2)
A 		5.5
(-3)
A 		7.5
(3)
A 		2
C 27.9
(-0.3)
A 		12.5
(-2.3)
A 		7.2
(-3)
A 		52.7
(3)
A 		46
avr 14.5
(-2.8) 		13.9
(-3) 		16.6
(-2.2) 		34
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 21.7
(0.9)
A 		9.2
(-1.6)
A 		11.6
(-1.1)
A 		3.7
(-2.7)
A 		32
(3)
A 		2.4
(-3)
A 		30
B 16.1
(-0.9)
A 		37.8
(3)
A 		11.8
(-1.6)
A 		8.5
(-2.2)
A 		30.2
(1.7)
A 		4
(-3)
A 		34
C 5.7
(-2.5)
A 		36.2
(3)
A 		6.4
(-2.4)
A 		6
(-2.5)
A 		4.8
(-2.7)
A 		3.2
(-3)
A 		33
avr 14.5
(-0.2) 		27.7
(3) 		9.9
(-1.4) 		6.1
(-2.3) 		22.3
(1.7) 		3.2
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3
(-3)
A 		5
(-1.2)
A 		9.7
(3)
A 		6.1
(-0.2)
A 		7
B 2.4
(3)
A 		1.5
(-1.9)
A 		1.3
(-3)
A 		1.6
(-1.4)
A 		1
C 9.2
(3)
A 		3.6
(-2)
A 		2.5
(-3)
A 		8.9
(2.7)
A 		7
avr 4.9
(1.3) 		3.4
(-3) 		4.5
(0.1) 		5.5
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 4
(-0.8)
A 		3.3
(-1.2)
A 		2.5
(-1.7)
A 		0.9
(-2.8)
A 		9.7
(3)
A 		0.6
(-3)
A 		9
B 5.6
(-0.8)
A 		12.6
(3)
A 		2.9
(-2.2)
A 		2.2
(-2.6)
A 		12.3
(2.8)
A 		1.5
(-3)
A 		11
C 2.1
(-2.4)
A 		11
(3)
A 		1.6
(-2.7)
A 		1.2
(-2.9)
A 		1.6
(-2.7)
A 		1.1
(-3)
A 		10
avr 3.9
(-0.9) 		9
(3) 		2.3
(-2.1) 		1.4
(-2.8) 		7.9
(2.2) 		1.1
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182394_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14545
Sequence Type Exemplar sequence
Representative Public ID F10A3.11 NCBI
Target Description F10A3.11 /REP_DB=WormBase Gene ID /WP=CE15776 /TR=O45342 /GB=CAB07347.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074671(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074671 NCBI Caenorhabditis elegans F10A3.11 (F10A3.11) mRNA, complete cds. 11/11 None
SNAP00000000100 ENSEMBL cdna:SNAP chromosome:CEL140:V:16165331:16166378:1 10/11 None
GENEFINDER00000000110 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16165331:16166378:1 11/11 None
F10A3.11 ENSEMBL cdna:known chromosome:CEL140:V:16165268:16166378:1 gene:F10A3.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16165267-16166378(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10A3.11
Entrez Gene 184280 Entrez gene
SwissProt O45342 EMBL-EBI
WormBase CE15776 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07347 Hypothetical protein F10A3.11 [Caenorhabditis elegans] ref|NP_507072.1| F10A3.11 [Caenorhabditis elegans] 1.0E-167
blast CAB07347 Hypothetical protein F10A3.11 [Caenorhabditis elegans] ref|NP_507072.1| F10A3.11 [Caenorhabditis elegans] 1.0E-161
blast CAB07347 Hypothetical protein F10A3.11 [Caenorhabditis elegans] ref|NP_507072.1| F10A3.11 [Caenorhabditis elegans] 1.0E-154
blast AAB66183 Hypothetical protein T07D3.2 [Caenorhabditis elegans] ref|NP_493844.1| T07D3.2 [Caenorhabditis elegans] 9.0E-26
blast AAB66183 Hypothetical protein T07D3.2 [Caenorhabditis elegans] ref|NP_493844.1| T07D3.2 [Caenorhabditis elegans] 3.0E-25
blast AAB66183 Hypothetical protein T07D3.2 [Caenorhabditis elegans] ref|NP_493844.1| T07D3.2 [Caenorhabditis elegans] 4.0E-25
blast CAB00094 Hypothetical protein F29D10.3 [Caenorhabditis elegans] ref|NP_492392.2| F29D10.3 [Caenorhabditis elegans] 2.0E-14
blast CAB00094 Hypothetical protein F29D10.3 [Caenorhabditis elegans] ref|NP_492392.2| F29D10.3 [Caenorhabditis elegans] 5.0E-13
Sequence
Target Sequence 
>C. ELEGANS:182394_AT
taattaccaacggatgccccagaacaaatcctctagccggaactggtatcgtagcaaatg
acaaatggattgatgaagcaggtggtcatgagaatataatcagttcagatggaaacattt
ggagtgttgaatacaataagtttgtctgcacaaatggaactcgtatgtttctaagaaact
ccacatttgtatgcatcggtgttcggtttttcgttgataaaacatgtgctgcccatgatt
atgcagtgaacttctgcgtttcggaaggattcgaaagtattacaggcccattccagccaa
tactcgtatatcgccaaagttcagaagatcgcacaagagcagccaaggaatacggtgacg
tcggaaattatcaatcctatgtgtggattgacggtaaaaatggcaagtatcaggacccag
ctctacaggcaagctacaattccgatgtgatgtgcgcatatgctgatcattcaaattgtg
cgtatttcggtgacaaatcgtgcccatctgttgattcgtacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTACCAACGGATGCCCCAGAAC 530 633 269 Antisense
GAACAAATCCTCTAGCCGGAACTGG 252 353 290 Antisense
GAAACTCCACATTTGTATGCATCGG 572 357 443 Antisense
ATGCATCGGTGTTCGGTTTTTCGTT 219 41 459 Antisense
GAAAGTATTACAGGCCCATTCCAGC 173 361 541 Antisense
CCATTCCAGCCAATACTCGTATATC 676 269 556 Antisense
TGGCAAGTATCAGGACCCAGCTCTA 134 547 669 Antisense
CTACAGGCAAGCTACAATTCCGATG 367 227 691 Antisense
GATGTGCGCATATGCTGATCATTCA 463 409 717 Antisense
ATTTCGGTGACAAATCGTGCCCATC 319 17 752 Antisense
TCGTGCCCATCTGTTGATTCGTACG 243 605 766 Antisense
Sequence Source Affymetrix Proprietary Database