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[182393_at]

Description T21G5.2 /REP_DB=WormBase Gene ID /WP=CE13890 /TR=O02062 /GB=AAB52898.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 24.5
(-1.1)
A 		20.1
(-2.5)
A 		18.5
(-3)
A 		37.9
(3)
A 		19
B 35.7
(3)
A 		27.9
(0.3)
A 		18.6
(-3)
A 		26.3
(-0.3)
A 		17
C 33.8
(-2.5)
A 		31.6
(-2.6)
A 		23.5
(-3)
A 		152.9
(3)
A 		129
avr 31.3
(-1.7) 		26.5
(-2.3) 		20.2
(-3) 		72.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 30.7
(-2.2)
A 		22.7
(-3)
A 		80
(3)
A 		25.4
(-2.7)
A 		45.7
(-0.6)
A 		53.1
(0.2)
A 		57
B 13.6
(-1.7)
A 		3.5
(-3)
A 		49.9
(3)
A 		17.2
(-1.2)
A 		25.8
(-0.1)
A 		26.8
(0)
A 		46
C 26.9
(-2.8)
A 		43.1
(-1.6)
A 		32.4
(-2.4)
A 		23.6
(-3)
A 		92.9
(1.8)
A 		109.8
(3)
P 		86
avr 23.7
(-2.8) 		23.1
(-2.9) 		54.1
(1.7) 		22.1
(-3) 		54.8
(1.8) 		63.2
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 8.9
(3)
A 		4.4
(-3)
A 		4.8
(-2.5)
A 		5.5
(-1.5)
A 		5
B 11.4
(3)
A 		6.9
(-0.8)
A 		4.3
(-3)
A 		5.6
(-1.9)
A 		7
C 11.2
(-2)
A 		9.1
(-2.7)
A 		8.2
(-3)
A 		25.8
(3)
A 		18
avr 10.5
(1.3) 		6.8
(-2.1) 		5.8
(-3) 		12.3
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 5.7
(-3)
A 		8.1
(-1.8)
A 		17.4
(3)
A 		6.4
(-2.6)
A 		13.8
(1.2)
A 		12.9
(0.7)
A 		12
B 4.7
(-1.1)
A 		1.2
(-3)
A 		12.1
(3)
A 		4.6
(-1.1)
A 		10.5
(2.1)
A 		10
(1.8)
A 		11
C 10
(-2)
A 		13.1
(-1.4)
A 		8.2
(-2.3)
A 		4.7
(-3)
A 		30
(1.7)
A 		36.7
(3)
P 		32
avr 6.8
(-2.3) 		7.5
(-2.1) 		12.6
(0) 		5.2
(-3) 		18.1
(2.3) 		19.9
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182393_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1449
Sequence Type Exemplar sequence
Representative Public ID T21G5.2 NCBI
Target Description T21G5.2 /REP_DB=WormBase Gene ID /WP=CE13890 /TR=O02062 /GB=AAB52898.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059563
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016517 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6878784:6880250:1 10/11 None
SNAP00000016510 ENSEMBL cdna:SNAP chromosome:CEL140:I:6879325:6880250:1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6878684-6880181(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52898 Hypothetical protein T21G5.2 [Caenorhabditis elegans] ref|NP_491964.2| T21G5.2 [Caenorhabditis elegans] 2.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016517 2 20-38,42-61
SNAP00000016510 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:182393_AT
ttcttgttggttgttcgtcgttgattaaaaagaaacgtgatccaccgtcgacaacaaaag
atgaaacagtgacaacacaaaaaccgttgatccagaatagtacacatagtactgataaga
gacgcgcggaattttttaagcgtatctctatacatttttgcaccactttcgaggctcgaa
aaattgctccaaatggttcagaaccatctgttcatccagctccaactccagttgccattc
aaactgttgtaacacctaaaagtactaccgtatcaaatacgacatcaacaccatctcaac
ctacatcaaaacctaaaacaccggttgctggatcacatgcgaaatccccgatgttcgaaa
aaactcaaaagaaaacatcaaatgagtcattgaagccaccaccaagaacacttcgaggag
ctgttccaataaatacaaaaagccgtgaagcccaaaaaacaatgaatgacgttgttgaag
tatcggcaaaaaatgtggcaccgcctcgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTGTTGGTTGTTCGTCGTTGAT 615 673 293 Antisense
AAAGAAACGTGATCCACCGTCGACA 601 119 321 Antisense
ACATTTTTGCACCACTTTCGAGGCT 537 105 444 Antisense
TCAGAACCATCTGTTCATCCAGCTC 126 623 490 Antisense
TCCAACTCCAGTTGCCATTCAAACT 320 587 513 Antisense
AAATACGACATCAACACCATCTCAA 187 117 567 Antisense
CCATCTCAACCTACATCAAAACCTA 224 271 583 Antisense
AAACACCGGTTGCTGGATCACATGC 432 129 608 Antisense
GATCACATGCGAAATCCCCGATGTT 548 421 623 Antisense
AATGAGTCATTGAAGCCACCACCAA 373 163 673 Antisense
GCAAAAAATGTGGCACCGCCTCGCA 291 319 778 Antisense
Sequence Source Affymetrix Proprietary Database