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[182392_at]

Description Y37H2A.6 /REP_DB=WormBase Gene ID /WP=CE24212 /TR=Q9U2N5 /GB=CAB60575.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 85      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 36.9
(-3)
A 		43.9
(-2.6)
A 		68.3
(-1.3)
A 		145.7
(3)
A 		109
B 35.1
(-3)
A 		87.5
(2.4)
A 		64.6
(0.1)
A 		93.1
(3)
M 		58
C 62.7
(-1.4)
A 		53.4
(-1.9)
A 		31
(-3)
A 		152.8
(3)
P 		122
avr 44.9
(-3) 		61.6
(-1.8) 		54.6
(-2.3) 		130.5
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 19.1
(-2.9)
A 		17.4
(-3)
A 		87.4
(3)
P 		69.6
(1.5)
A 		79.6
(2.3)
P 		78.2
(2.2)
P 		70
B 50.5
(-1.8)
A 		37.2
(-3)
A 		78.7
(0.7)
A 		75.8
(0.4)
A 		73.6
(0.2)
P 		104.5
(3)
P 		67
C 40.8
(-2.3)
A 		111.1
(3)
P 		30.9
(-3)
A 		76.2
(0.4)
P 		74.7
(0.3)
M 		95.8
(1.9)
P 		80
avr 36.8
(-3) 		55.2
(-1) 		65.7
(0.1) 		73.9
(1) 		76
(1.2) 		92.8
(3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 13.4
(-1)
A 		9.5
(-3)
A 		17.9
(1.3)
A 		21.3
(3)
A 		12
B 11.2
(-3)
A 		21.6
(3)
A 		15
(-0.8)
A 		19.8
(2)
M 		10
C 20.8
(1)
A 		15.4
(-1.2)
A 		10.8
(-3)
A 		25.8
(3)
P 		15
avr 15.1
(-2.6) 		15.5
(-2.3) 		14.6
(-3) 		22.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 3.5
(-3)
A 		6.2
(-2.2)
A 		19
(1.5)
P 		17.7
(1.2)
A 		24
(3)
P 		19
(1.5)
P 		21
B 17.6
(-1.8)
A 		12.4
(-3)
A 		19.1
(-1.5)
A 		20.1
(-1.3)
A 		29.9
(0.9)
P 		39
(3)
P 		27
C 15.1
(-1.3)
A 		33.9
(3)
P 		7.9
(-3)
A 		15.3
(-1.3)
P 		24.2
(0.8)
M 		32.1
(2.6)
P 		26
avr 12.1
(-3) 		17.5
(-1.2) 		15.3
(-1.9) 		17.7
(-1.1) 		26
(1.7) 		30
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182392_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14369
Sequence Type Exemplar sequence
Representative Public ID Y37H2A.6 NCBI
Target Description Y37H2A.6 /REP_DB=WormBase Gene ID /WP=CE24212 /TR=Q9U2N5 /GB=CAB60575.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075137(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075137 NCBI Caenorhabditis elegans Y37H2A.6 (Y37H2A.6) mRNA, complete cds. 11/11 None
SNAP00000043009 ENSEMBL cdna:SNAP chromosome:CEL140:V:18128293:18141406:1 10/11 None
GENEFINDER00000043021 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18130196:18131544:1 11/11 None
Y37H2A.6 ENSEMBL cdna:known chromosome:CEL140:V:18129907:18131544:1 gene:Y37H2A.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18129906-18131544(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37H2A.6
Entrez Gene 189629 Entrez gene
SwissProt Q9U2N5 EMBL-EBI
WormBase CE24212 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60575 Hypothetical protein Y37H2A.6 [Caenorhabditis elegans] ref|NP_507538.1| Y37H2A.6 [Caenorhabditis elegans] 0.0
blast CAB60570 Hypothetical protein Y37H2A.5 [Caenorhabditis elegans] ref|NP_507537.1| Y37H2A.5 [Caenorhabditis elegans] 0.0
blast CAB60572 Hypothetical protein Y37H2A.8 [Caenorhabditis elegans] ref|NP_507540.1| Y37H2A.8 [Caenorhabditis elegans] 1.0E-149
blast CAB60570 Hypothetical protein Y37H2A.5 [Caenorhabditis elegans] ref|NP_507537.1| Y37H2A.5 [Caenorhabditis elegans] 3.0E-43
blast CAB04503 Hypothetical protein F57G4.4 [Caenorhabditis elegans] ref|NP_507460.1| F57G4.4 [Caenorhabditis elegans] 2.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-46
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.2E-49
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-46
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.9E-16
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.1E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-9
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0018
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.2E-46
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.6E-9
Sequence
Target Sequence 
>C. ELEGANS:182392_AT
acatagctgaagttctcactcgcgttttcaaaccgatttctcctgtgactgtcaaagaaa
ttgagacttccgatctgacatttccggaagttgaacgtattttgtctcatgtggaaccag
gaagacttgaaacaattcattttatcgatccttcatttgataatagtaattctgaattgt
ttgatgctttcattcaatcagaacacgtcagaaaagcaaaggagcttcatatcacaaata
tagtagcatattcttttccaattcaaaaactcttccatctcgagagactctacgttacaa
tcggcgtcttctccgcacatgatgccattaacatccgagatgttcttctacaatcagtta
acttccaatgttttcatttttatgttgaaaaagccggatttgatgtcgtcgaaattgtga
gattgtttgacccgagctattccggcgattcagacggaacaatcatctatcgcgcataca
acttagttttcaacattcatttctccaggcatcgtttgcgctttgagaagcgtgtcacaa
acacaaaaaacttctcttcgtatctgcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATAGCTGAAGTTCTCACTCGCGT 359 105 638 Antisense
TCAAACCGATTTCTCCTGTGACTGT 482 629 665 Antisense
GAGACTTCCGATCTGACATTTCCGG 512 391 700 Antisense
AACTCTTCCATCTCGAGAGACTCTA 34 141 905 Antisense
TACGTTACAATCGGCGTCTTCTCCG 264 649 928 Antisense
GTGAGATTGTTTGACCCGAGCTATT 695 481 1054 Antisense
CCCGAGCTATTCCGGCGATTCAGAC 42 261 1068 Antisense
GACGGAACAATCATCTATCGCGCAT 198 377 1090 Antisense
AACATTCATTTCTCCAGGCATCGTT 500 137 1129 Antisense
TCCAGGCATCGTTTGCGCTTTGAGA 90 591 1141 Antisense
AAAAACTTCTCTTCGTATCTGCGGT 681 129 1183 Antisense
Sequence Source Affymetrix Proprietary Database