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[182391_at]

Description C54D10.4 /REP_DB=WormBase Gene ID /WP=CE05500 /TR=Q18833 /GB=CAA99805.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 07      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 24.1
(-3)
A 		24.4
(-2.9)
A 		57.1
(3)
A 		46.2
(1)
A 		33
B 32.8
(3)
P 		23.7
(1.2)
A 		15.6
(-0.3)
A 		1.7
(-3)
A 		31
C 49.2
(3)
P 		6.8
(-3)
A 		15.7
(-1.7)
A 		46.4
(2.6)
A 		42
avr 35.4
(3) 		18.3
(-3) 		29.5
(0.9) 		31.4
(1.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 112
1 2 3 4 5 6 range
A 63.7
(-0.1)
A 		18.1
(-3)
A 		53.5
(-0.8)
A 		36.1
(-1.9)
A 		67.8
(0.1)
P 		114
(3)
P 		96
B 42.6
(-1.5)
A 		22.6
(-2.6)
A 		45.5
(-1.4)
A 		15.2
(-3)
A 		94.4
(1.2)
P 		127.2
(3)
P 		112
C 15.9
(-3)
A 		33.4
(-1.7)
P 		48.2
(-0.5)
P 		28.8
(-2)
A 		68.2
(1)
P 		93.7
(3)
P 		78
avr 40.7
(-1.9) 		24.7
(-3) 		49.1
(-1.3) 		26.7
(-2.9) 		76.8
(0.6) 		111.6
(3) 		87
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 8.8
(-0.8)
A 		5.3
(-3)
A 		14.9
(3)
A 		6.8
(-2.1)
A 		10
B 10.5
(3)
P 		5.9
(0.3)
A 		3.6
(-1.1)
A 		0.4
(-3)
A 		10
C 16.3
(3)
P 		2
(-3)
A 		5.5
(-1.5)
A 		7.8
(-0.6)
A 		14
avr 11.9
(3) 		4.4
(-3) 		8
(-0.1) 		5
(-2.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 11.7
(-1.5)
A 		6.4
(-3)
A 		11.7
(-1.5)
A 		9.2
(-2.2)
A 		20.5
(1)
P 		27.8
(3)
P 		21
B 14.8
(-1.5)
A 		7.5
(-2.5)
A 		11
(-2)
A 		4
(-3)
A 		38.3
(1.7)
P 		47.4
(3)
P 		43
C 5.9
(-3)
A 		10.2
(-2)
P 		12.3
(-1.5)
P 		5.8
(-3)
A 		22.1
(0.8)
P 		31.4
(3)
P 		26
avr 10.8
(-2.1) 		8
(-2.7) 		11.7
(-1.9) 		6.3
(-3) 		27
(1.3) 		35.5
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182391_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14537
Sequence Type Exemplar sequence
Representative Public ID C54D10.4 NCBI
Target Description C54D10.4 /REP_DB=WormBase Gene ID /WP=CE05500 /TR=Q18833 /GB=CAA99805.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073716 NCBI Caenorhabditis elegans C54D10.4 (C54D10.4) mRNA, complete cds. 11/11 None
SNAP00000038019 ENSEMBL cdna:SNAP chromosome:CEL140:V:12422089:12423499:-1 11/11 None
GENEFINDER00000038033 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12422015:12424350:-1 10/11 None
C54D10.4 ENSEMBL cdna:known chromosome:CEL140:V:12422089:12424851:-1 gene:C54D10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12422088-12424851(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C54D10.4
Entrez Gene 183781 Entrez gene
SwissProt Q18833 EMBL-EBI
WormBase CE05500 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99805 Hypothetical protein C54D10.4 [Caenorhabditis elegans] ref|NP_506117.1| C54D10.4 [Caenorhabditis elegans] 0.0
blast CAA99805 Hypothetical protein C54D10.4 [Caenorhabditis elegans] ref|NP_506117.1| C54D10.4 [Caenorhabditis elegans] 1.0E-151
blast CAE75482 Hypothetical protein CBG23486 [Caenorhabditis briggsae] 1.0E-80
blast CAE75482 Hypothetical protein CBG23486 [Caenorhabditis briggsae] 5.0E-72
blast CAE75482 Hypothetical protein CBG23486 [Caenorhabditis briggsae] 4.0E-71
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506117.1 3 112-129,149-171,184-206
C54D10.4 3 112-129,149-171,184-206
SNAP00000038019 3 7-29,49-71,78-100
GENEFINDER00000038033 4 91-108,128-150,163-185,323-342
Sequence
Target Sequence 
>C. ELEGANS:182391_AT
tttcctgaccggtatctatttcttcttccacagtcatgaaggactcattgttcaaccaag
tattgagaaaggttttgtcacgctgaagaatcatgcttacaagtatcataagaatttgaa
tgaaacaattgcaaacgacacaggaaaaccttcagttaaaccgagatctaccaatataac
tatcaaacatcttcctgtgacttcttctcttatgaatcaatatttaattgctgacagggt
tcagagaagatactgttgctgtggttacaatggggcaatcgattatgggttcttcaataa
aacaactgcatcagaagacaaaataccgtttacatcgacgctgaatattgggtgccctca
taactcacttttcaaaaattccacatgtggaaaaactcactctagaggttgtgaagaacg
cttgaaaacactatacacaatggatagacggcttgctagatccaagtatatccgtgattg
gaggcattccttagagatccatgtcaatgatcatcgaatgtgggcgatgaggaaaacagc
aaaagaaacgaaaaagattgaagagaagaacccaagtccagtgtctccagtgaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCTGACCGGTATCTATTTCTTC 700 669 612 Antisense
TCTATTTCTTCTTCCACAGTCATGA 375 615 626 Antisense
GAAGGACTCATTGTTCAACCAAGTA 397 333 649 Antisense
TCAAACATCTTCCTGTGACTTCTTC 338 629 794 Antisense
GAGAAGATACTGTTGCTGTGGTTAC 231 391 855 Antisense
GGGGCAATCGATTATGGGTTCTTCA 704 497 883 Antisense
AAAATACCGTTTACATCGACGCTGA 642 131 931 Antisense
TCGACGCTGAATATTGGGTGCCCTC 596 289 946 Antisense
TGCCCTCATAACTCACTTTTCAAAA 125 585 964 Antisense
GAGGCATTCCTTAGAGATCCATGTC 504 405 1092 Antisense
CAAGTCCAGTGTCTCCAGTGAATAT 96 185 1184 Antisense
Sequence Source Affymetrix Proprietary Database