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[182390_at]

Description D1007.4 /REP_DB=WormBase Gene ID /WP=CE09039 /TR=O01871 /GB=AAK18911.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 82      6grp_total > 78      4grp_total > 19      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 417
1 2 3 4 range
A 281.5
(-2.5)
P 		355.7
(-1)
P 		254.7
(-3)
P 		560.1
(3)
P 		305
B 271.5
(-3)
P 		407.1
(0.5)
P 		281.1
(-2.8)
P 		504
(3)
P 		233
C 403.9
(-0.9)
P 		353.7
(-1.7)
P 		262.8
(-3)
P 		671.2
(3)
P 		408
avr 319
(-2) 		372.2
(-1) 		266.2
(-3) 		578.4
(3) 		312

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 307.2
(-2.1)
P 		279.1
(-3)
P 		429.4
(2)
P 		404.5
(1.2)
P 		327.2
(-1.4)
P 		459.6
(3)
P 		181
B 339.4
(-1.2)
P 		338.9
(-1.2)
P 		293.2
(-2)
P 		235.8
(-3)
P 		434.4
(0.4)
P 		582.9
(3)
P 		347
C 305.2
(-2)
P 		352.6
(-1.1)
P 		246.5
(-3)
P 		265.2
(-2.7)
P 		308.5
(-1.9)
P 		585.6
(3)
P 		339
avr 317.3
(-2.6) 		323.5
(-2.5) 		323
(-2.5) 		301.8
(-3) 		356.7
(-1.6) 		542.7
(3) 		241
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 102.5
(3)
P 		77.2
(-1.2)
P 		66.6
(-3)
P 		82
(-0.4)
P 		36
B 86.6
(0)
P 		100.5
(2)
P 		65.1
(-3)
P 		107.4
(3)
P 		42
C 133.7
(3)
P 		101.7
(-1.6)
P 		91.6
(-3)
P 		113.2
(0.1)
P 		42
avr 107.6
(3) 		93.1
(0.4) 		74.4
(-3) 		100.9
(1.8) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 56.6
(-3)
P 		99.3
(1.6)
P 		93.5
(1)
P 		102.6
(2)
P 		98.7
(1.6)
P 		111.9
(3)
P 		55
B 118.1
(-0.8)
P 		112.8
(-1)
P 		71.2
(-2.7)
P 		62.4
(-3)
P 		176.5
(1.4)
P 		217.4
(3)
P 		155
C 113.1
(-0.5)
P 		107.6
(-0.7)
P 		62.7
(-2.6)
P 		53.3
(-3)
P 		99.8
(-1)
P 		196
(3)
P 		143
avr 95.9
(-1.6) 		106.6
(-1) 		75.8
(-2.8) 		72.8
(-3) 		125
(0.1) 		175.1
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182390_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1462
Sequence Type Exemplar sequence
Representative Public ID D1007.4 NCBI
Target Description D1007.4 /REP_DB=WormBase Gene ID /WP=CE09039 /TR=O01871 /GB=AAK18911.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058995(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058995 NCBI Caenorhabditis elegans D1007.4 (D1007.4) mRNA, complete cds. 11/11 None
SNAP00000011279 ENSEMBL cdna:SNAP chromosome:CEL140:I:4580023:4580585:-1 11/11 None
GENEFINDER00000011310 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4580023:4580585:-1 11/11 None
D1007.4 ENSEMBL cdna:known chromosome:CEL140:I:4580023:4580585:-1 gene:D1007.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4580022-4580585(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1007.4
Entrez Gene 183887 Entrez gene
SwissProt O01871 EMBL-EBI
WormBase CE09039 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18911 Hypothetical protein D1007.4 [Caenorhabditis elegans] ref|NP_491396.1| D1007.4 [Caenorhabditis elegans] 5.0E-81
blast CAE74522 Hypothetical protein CBG22276 [Caenorhabditis briggsae] 2.0E-44
Sequence
Target Sequence 
>C. ELEGANS:182390_AT
gatcaaatttgggaccttctcggacaccaaattcaaattgaacttgacacgggtgacgtc
agaagacaagaatctacgacaggacacttgatgacaagggatcctgttagccaatcgcta
ttaattgcgaaaattgaagaaaattctacttcaattaaatcgattgaatggataccaagc
tgctccgtgaaatcgatcagaaaacttaaaaataccgaaaacccggaaatccacgtggca
atcgagaaatacttcgagaatgacggaatagaaggcggtagcagtggagctgaagattca
gaggaagatatcaagaagagagctcatcgagtggttaactatctgaaatctcatcatttg
gatgtggtcgagaagcctaatggcacatacatcatcgctggaactgttcgatttgagaga
ccctaccataatgcaaacctttattgtgacattccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAAATTTGGGACCTTCTCGGAC 469 419 22 Antisense
GAATCTACGACAGGACACTTGATGA 420 327 91 Antisense
CAAGGGATCCTGTTAGCCAATCGCT 16 185 116 Antisense
GGATACCAAGCTGCTCCGTGAAATC 708 509 191 Antisense
AACCCGGAAATCCACGTGGCAATCG 283 145 241 Antisense
GAGCTCATCGAGTGGTTAACTATCT 503 387 341 Antisense
GGATGTGGTCGAGAAGCCTAATGGC 496 513 381 Antisense
TGGCACATACATCATCGCTGGAACT 494 545 402 Antisense
GGAACTGTTCGATTTGAGAGACCCT 608 529 421 Antisense
GAGACCCTACCATAATGCAAACCTT 272 393 438 Antisense
GCAAACCTTTATTGTGACATTCCAA 109 319 454 Antisense
Sequence Source Affymetrix Proprietary Database