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[182389_at] 7TM receptor, srbc family

Description T05G11.2 /REP_DB=WormBase Gene ID /WP=CE18931 /TR=Q9XXK0 /GB=CAA19430.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 07      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 40.3
(-1.8)
A 		31.7
(-3)
M 		44.5
(-1.3)
P 		76.4
(3)
A 		45
B 18.3
(0.7)
A 		11.3
(-3)
A 		20
(1.5)
A 		22.8
(3)
A 		12
C 45.4
(3)
A 		10.7
(-2.7)
A 		18.6
(-1.4)
A 		8.7
(-3)
A 		37
avr 34.7
(2.6) 		17.9
(-3) 		27.7
(0.2) 		36
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 40.8
(1.6)
A 		19.4
(-1.1)
A 		52.2
(3)
A 		4.7
(-3)
A 		47.7
(2.4)
A 		7.1
(-2.7)
A 		48
B 18.5
(0.2)
A 		29.5
(3)
A 		19.1
(0.4)
A 		12
(-1.4)
A 		5.9
(-3)
A 		9.5
(-2.1)
A 		24
C 19
(-1)
A 		46.9
(3)
P 		37.6
(1.7)
A 		40.2
(2)
A 		11.3
(-2.1)
A 		4.8
(-3)
A 		42
avr 26.1
(0.9) 		31.9
(2.1) 		36.3
(3) 		19
(-0.6) 		21.6
(-0) 		7.1
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14.7
(3)
A 		6.9
(-3)
M 		11.6
(0.6)
P 		11.2
(0.3)
A 		8
B 5.9
(3)
A 		2.8
(-3)
A 		4.6
(0.5)
A 		4.9
(1.1)
A 		3
C 15
(3)
A 		3.1
(-2.3)
A 		6.5
(-0.8)
A 		1.5
(-3)
A 		14
avr 11.9
(3) 		4.3
(-3) 		7.6
(-0.4) 		5.9
(-1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 7.5
(-0.1)
A 		6.9
(-0.4)
A 		11.4
(1.6)
A 		1.2
(-3)
A 		14.4
(3)
A 		1.7
(-2.8)
A 		13
B 6.4
(0.2)
A 		9.8
(3)
A 		4.6
(-1.2)
A 		3.2
(-2.4)
A 		2.4
(-3)
A 		3.5
(-2.1)
A 		7
C 7
(-0.4)
A 		14.3
(3)
P 		9.6
(0.8)
A 		8.1
(0.1)
A 		3.6
(-2.1)
A 		1.6
(-3)
A 		13
avr 7
(0.5) 		10.3
(3) 		8.5
(1.7) 		4.2
(-1.6) 		6.8
(0.4) 		2.3
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182389_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14526
Sequence Type Exemplar sequence
Representative Public ID T05G11.2 NCBI
Target Description T05G11.2 /REP_DB=WormBase Gene ID /WP=CE18931 /TR=Q9XXK0 /GB=CAA19430.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074589
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074589 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-77) (srbc-77) mRNA, complete cds. None
T05G11.2 ENSEMBL cdna:known chromosome:CEL140:V:15932766:15933668:1 gene:T05G11.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15932765-15933668(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-77
Ensembl T05G11.2
Entrez Gene 188143 Entrez gene
SwissProt Q9XXK0 EMBL-EBI
WormBase CE38101 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19430 Hypothetical protein T05G11.2 [Caenorhabditis elegans] ref|NP_506990.2| Serpentine Receptor, class BC (class B-like) family member (srbc-77) [Caenorhabditis elegans] 1.0E-132
blast CAB05561 Hypothetical protein M01B2.3 [Caenorhabditis elegans] ref|NP_506775.1| Serpentine Receptor, class BC (class B-like) family member (srbc-75) [Caenorhabditis elegans] 2.0E-59
blast CAB05562 Hypothetical protein M01B2.4 [Caenorhabditis elegans] ref|NP_506774.1| Serpentine Receptor, class BC (class B-like) family member (srbc-76) [Caenorhabditis elegans] 2.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.6E-55
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 4.3E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506990.2 6 7-29,53-75,96-115,125-147,178-200,215-237
T05G11.2 6 7-29,53-75,96-115,125-147,178-200,215-237
Sequence
Target Sequence 
>C. ELEGANS:182389_AT
gttattgccacatattttccagttttattttataaatatcggtgtaaaacttccaccatt
atgatttacaccagtattttgatttgtggactgatcaatcaatatgtactttttggatac
tgtggtaatgttatagatacaccattacagtgtagtagcttcttttgcgctatcaatagt
tgctattactattactggctgacttatgaagaagtggttagttttttaaatggaattttc
tcagtggctctattgtttcgatttttcatttggaattttctctcaaagaccccatcatcg
aaccataaaattgctagagtgagtttcagcttgaatttgacatttattgtagattatacg
attcaggctacccgcattgcacttctcgactttttcatcatactcttcttcaatgtgatc
ccttcgtacacttttgcccatagcaccactgtcaacgttaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATTGCCACATATTTTCCAGTTT 569 447 331 Antisense
GTAGTAGCTTCTTTTGCGCTATCAA 182 457 482 Antisense
GCTATTACTATTACTGGCTGACTTA 24 305 512 Antisense
AATGGAATTTTCTCAGTGGCTCTAT 350 161 559 Antisense
GTGGCTCTATTGTTTCGATTTTTCA 32 493 574 Antisense
AATTTTCTCTCAAAGACCCCATCAT 551 175 604 Antisense
AGACCCCATCATCGAACCATAAAAT 441 69 617 Antisense
TTATACGATTCAGGCTACCCGCATT 612 679 684 Antisense
CATACTCTTCTTCAATGTGATCCCT 9 215 729 Antisense
CAATGTGATCCCTTCGTACACTTTT 389 183 741 Antisense
CCATAGCACCACTGTCAACGTTAAG 674 267 768 Antisense
Sequence Source Affymetrix Proprietary Database