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[182388_at]

Description F53C11.1 /REP_DB=WormBase Gene ID /WP=CE10904 /TR=Q93765 /GB=CAB02120.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 90      6grp_total > 23      4grp_total > 63      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 277
1 2 3 4 range
A 431.6
(3)
P 		299.5
(-3)
P 		412.1
(2.1)
P 		300.4
(-3)
P 		132
B 499.8
(3)
P 		222.9
(-3)
P 		351.5
(-0.2)
P 		252.1
(-2.4)
P 		277
C 406.4
(3)
P 		290.9
(-1.3)
P 		391.1
(2.4)
P 		245.4
(-3)
P 		161
avr 445.9
(3) 		271.1
(-2.8) 		384.9
(1) 		266
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 214.4
(3)
P 		137.6
(-0.5)
P 		170.1
(1)
P 		138.4
(-0.4)
P 		99.8
(-2.2)
P 		81.3
(-3)
P 		133
B 239.9
(3)
P 		182.7
(0.6)
P 		173.9
(0.2)
P 		124.7
(-1.8)
P 		125.8
(-1.8)
P 		97
(-3)
P 		143
C 226.1
(3)
P 		189.2
(1.7)
P 		132.9
(-0.3)
P 		203.2
(2.2)
P 		64
(-2.7)
P 		56.3
(-3)
P 		170
avr 226.8
(3) 		169.8
(0.7) 		159
(0.3) 		155.4
(0.1) 		96.5
(-2.3) 		78.2
(-3) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 157.1
(3)
P 		65
(-1.9)
P 		107.7
(0.4)
P 		44
(-3)
P 		113
B 159.4
(3)
P 		55
(-2.9)
P 		81.5
(-1.4)
P 		53.7
(-3)
P 		106
C 134.5
(2.9)
P 		83.6
(-0.3)
P 		136.3
(3)
P 		41.4
(-3)
P 		95
avr 150.3
(3) 		67.9
(-1.8) 		108.5
(0.6) 		46.4
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 39.5
(1.1)
P 		48.9
(3)
P 		37.1
(0.6)
P 		35.1
(0.2)
P 		30.1
(-0.9)
P 		19.8
(-3)
P 		29
B 83.5
(3)
P 		60.8
(0.3)
P 		42.2
(-1.9)
P 		33
(-3)
P 		51.1
(-0.8)
P 		36.2
(-2.6)
P 		51
C 83.8
(3)
P 		57.7
(0.6)
P 		33.8
(-1.6)
P 		40.9
(-1)
P 		20.7
(-2.8)
P 		18.8
(-3)
P 		65
avr 68.9
(3) 		55.8
(1.2) 		37.7
(-1.3) 		36.3
(-1.4) 		34
(-1.8) 		24.9
(-3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182388_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14365
Sequence Type Exemplar sequence
Representative Public ID F53C11.1 NCBI
Target Description F53C11.1 /REP_DB=WormBase Gene ID /WP=CE10904 /TR=Q93765 /GB=CAB02120.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074010(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074010 NCBI Caenorhabditis elegans F53C11.1 (F53C11.1) mRNA, complete cds. 11/11 A 
SNAP00000007155 ENSEMBL cdna:SNAP chromosome:CEL140:V:13778955:13781138:1 11/11 None
GENEFINDER00000007171 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13778393:13780341:1 11/11 None
F53C11.1 ENSEMBL cdna:known chromosome:CEL140:V:13778340:13780346:1 gene:F53C11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13778392-13779611(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F53C11.1
Entrez Gene 179871 Entrez gene
SwissProt Q93765 EMBL-EBI
WormBase CE32431 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02120 Hypothetical protein F53C11.1 [Caenorhabditis elegans] ref|NP_506411.2| F53C11.1 [Caenorhabditis elegans] 0.0
blast CAE66246 Hypothetical protein CBG11490 [Caenorhabditis briggsae] 1.0E-106
blast CAB02085 Hypothetical protein F20G2.5 [Caenorhabditis elegans] ref|NP_506410.1| F20G2.5 [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 4.4E-29
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.9E-6
Sequence
Target Sequence 
>C. ELEGANS:182388_AT
atttccacaaactcgggcaaagctagtttctatttttcctggcaatatattgatgtttcg
aagttcactcgcattcaaaatccaactggaacagtgttaaatttgaatctaactgccaat
agtttctatcagtttgtttcatcagctgatcaagttgcattccatacttctgcattggga
attctttcagacagttctatttggaagatttacgtgtatgatggggaagatttgaatgca
aaattcatggggaatctgaagcaatttacaaatattggtagctcgtctacccggaaatcg
ttgtcacttgtgaacttttacgaaactccttcacaatcatacggcattgctaatgactat
tcaattgtctctagatacaaggactactcattaaggatattatcaagtggatctgacttt
ttcgagcgtttcttcgtcccggatggagttaaatctgctgtcacatttttctgccctgat
tcaatggaaacgtatatcactggtcttactatcgtcaaacaaaattttcctggcgaaaaa
tttgtcagtttcactccactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCCACAAACTCGGGCAAAGCTA 633 15 334 Antisense
GTTTCGAAGTTCACTCGCATTCAAA 179 451 388 Antisense
GTTTCTATCAGTTTGTTTCATCAGC 108 451 455 Antisense
GTTGCATTCCATACTTCTGCATTGG 239 439 487 Antisense
GTCTACCCGGAAATCGTTGTCACTT 266 467 618 Antisense
AACTCCTTCACAATCATACGGCATT 649 141 657 Antisense
TGGATCTGACTTTTTCGAGCGTTTC 113 551 741 Antisense
AAATCTGCTGTCACATTTTTCTGCC 154 119 784 Antisense
ATTTTTCTGCCCTGATTCAATGGAA 20 15 798 Antisense
ATCACTGGTCTTACTATCGTCAAAC 28 29 829 Antisense
AAAATTTGTCAGTTTCACTCCACTC 607 133 870 Antisense
Sequence Source Affymetrix Proprietary Database