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[182387_at]

Description Y37D8A.3 /REP_DB=WormBase Gene ID /WP=CE20208 /TR=Q9XWV1 /GB=CAA21540.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 53      6grp_total > 70      4grp_total > 33      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 759
1 2 3 4 range
A 99.4
(-3)
P 		858
(3)
P 		577.9
(0.8)
P 		652.9
(1.4)
P 		759
B 122.2
(-3)
P 		707.9
(3)
P 		625.7
(2.2)
P 		529.9
(1.2)
P 		586
C 98.8
(-3)
P 		761
(3)
P 		659.2
(2.1)
P 		659
(2.1)
P 		662
avr 106.8
(-3) 		775.6
(3) 		620.9
(1.6) 		613.9
(1.5) 		669

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1745
1 2 3 4 5 6 range
A 406.4
(-2.8)
P 		350.6
(-3)
P 		1167.8
(-0.1)
P 		2019.5
(3)
P 		780.4
(-1.5)
P 		461
(-2.6)
P 		1669
B 407.9
(-2.3)
P 		274.4
(-3)
P 		984.9
(0.8)
P 		1393.6
(3)
P 		899.3
(0.4)
P 		470.6
(-1.9)
P 		1119
C 475
(-2.3)
P 		308.8
(-3)
P 		929
(-0.4)
P 		1735.2
(3)
P 		795.9
(-1)
P 		499.4
(-2.2)
P 		1426
avr 429.8
(-2.5) 		311.3
(-3) 		1027.2
(0.1) 		1716.1
(3) 		825.2
(-0.8) 		477
(-2.3) 		1405
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 36.2
(-3)
P 		186.3
(3)
P 		151.1
(1.6)
P 		95.6
(-0.6)
P 		150
B 39
(-3)
P 		174.8
(3)
P 		145
(1.7)
P 		112.9
(0.3)
P 		136
C 32.7
(-3)
P 		218.8
(2.7)
P 		229.8
(3)
P 		111.1
(-0.6)
P 		197
avr 36
(-3) 		193.3
(3) 		175.3
(2.3) 		106.5
(-0.3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 437
1 2 3 4 5 6 range
A 74.9
(-3)
P 		124.7
(-2.3)
P 		254.3
(-0.5)
P 		512.2
(3)
P 		235.5
(-0.8)
P 		112.2
(-2.5)
P 		437
B 141.9
(-1.9)
P 		91.3
(-3)
P 		239.2
(0.2)
P 		369.1
(3)
P 		365.4
(2.9)
P 		175.5
(-1.2)
P 		278
C 176
(-1.1)
P 		94.2
(-3)
P 		236.4
(0.3)
P 		349
(3)
P 		257.6
(0.8)
P 		167.2
(-1.3)
P 		255
avr 130.9
(-2.5) 		103.4
(-3) 		243.3
(-0.3) 		410.1
(3) 		286.2
(0.6) 		151.6
(-2.1) 		307
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 182387_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7794
Sequence Type Exemplar sequence
Representative Public ID Y37D8A.3 NCBI
Target Description Y37D8A.3 /REP_DB=WormBase Gene ID /WP=CE20208 /TR=Q9XWV1 /GB=CAA21540.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067268(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067268 NCBI Caenorhabditis elegans Y37D8A.3 (Y37D8A.3) mRNA, complete cds. 11/11 None
SNAP00000028770 ENSEMBL cdna:SNAP chromosome:CEL140:III:12819948:12835208:1 10/11 None
GENEFINDER00000028798 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12829243:12837003:1 11/11 None
Y37D8A.3 ENSEMBL cdna:known chromosome:CEL140:III:12829241:12837138:1 gene:Y37D8A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12829238-12836999(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.3
Entrez Gene 189612 Entrez gene
SwissProt Q9XWV1 EMBL-EBI
WormBase CE20208 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21539 Hypothetical protein Y37D8A.2 [Caenorhabditis elegans] ref|NP_499668.1| Y37D8A.2 [Caenorhabditis elegans] 0.0
blast CAE69535 Hypothetical protein CBG15744 [Caenorhabditis briggsae] 0.0
blast CAA21540 Hypothetical protein Y37D8A.3 [Caenorhabditis elegans] ref|NP_499669.1| Y37D8A.3 [Caenorhabditis elegans] 1.0E-173
blast CAA21540 Hypothetical protein Y37D8A.3 [Caenorhabditis elegans] ref|NP_499669.1| Y37D8A.3 [Caenorhabditis elegans] 1.0E-164
blast CAA21540 Hypothetical protein Y37D8A.3 [Caenorhabditis elegans] ref|NP_499669.1| Y37D8A.3 [Caenorhabditis elegans] 1.0E-159
blast CAE69538 Hypothetical protein CBG15747 [Caenorhabditis briggsae] 1.0E-157
blast CAE69538 Hypothetical protein CBG15747 [Caenorhabditis briggsae] 1.0E-148
blast CAA87779 Hypothetical protein F42A8.1 [Caenorhabditis elegans] ref|NP_495991.1| F42A8.1 [Caenorhabditis elegans] sp|Q09321|YR51_CAEEL Hypothetical protein F42A8.1 in chromosome II 8.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR007000 EMBL-EBI Laminin A 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:182387_AT
tcaacttggtcgaacctttgtccgaagtggaatgaaacacttttgcagtattcaaggtga
caatgtaacatataaacaagaaagtatgtgctatgaaaatggaatgcattataatgttgg
agactcgttccgtaatggatcattcaaattgacgtgtcgtgaacaagggatttatgttga
aggatgttacatgcaaaatagcttcagcgatcttctgatgtccggagaatcaagaatcga
aaatggaaaacgtcatgaatgtgaaatcatcggtccaggaaaagttagatatgttgtgaa
aatgctcggatgcatgcacgaaggacaacaatacagtactggtcaaatgtggacacatca
acatgtcagatatcaatgcaagaacgacggaaccctattggttttgggttgcctggacga
tggactctttattgaattgggacgggatcttttgatgaatggaatggctcacagatgcta
tcaagtcaacactacggtattctatcacaaattcgcttgtgagcaatcttcattgtcaga
atgcgtttcccaatcgatgcacaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACTTGGTCGAACCTTTGTCCGA 354 627 330 Antisense
GGAGACTCGTTCCGTAATGGATCAT 447 519 448 Antisense
GCTTCAGCGATCTTCTGATGTCCGG 101 305 530 Antisense
TGCTCGGATGCATGCACGAAGGACA 96 577 632 Antisense
AATGCAAGAACGACGGAACCCTATT 126 165 704 Antisense
ATTGGTTTTGGGTTGCCTGGACGAT 556 1 726 Antisense
GCCTGGACGATGGACTCTTTATTGA 181 283 740 Antisense
GAATTGGGACGGGATCTTTTGATGA 271 323 763 Antisense
GGAATGGCTCACAGATGCTATCAAG 148 533 790 Antisense
GTCAACACTACGGTATTCTATCACA 103 465 814 Antisense
ATGCGTTTCCCAATCGATGCACAGA 695 41 870 Antisense
Sequence Source Affymetrix Proprietary Database