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[182386_s_at]

Description Y37A1B.7 /REP_DB=WormBase Gene ID /WP=CE19077 /TR=Q9XXG7 /GB=CAA19482.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      6grp_highest_nonorm > 71      6grp_total > 20      4grp_total > 49      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1367
1 2 3 4 range
A 4.4
(-3)
A 		1371.1
(3)
P 		1036.2
(1.5)
P 		13.3
(-3)
A 		1367
B 38.1
(-3)
A 		1084.3
(2.9)
P 		1103.4
(3)
P 		33.2
(-3)
A 		1070
C 19.1
(-3)
A 		1054.9
(3)
P 		943.6
(2.4)
P 		22.3
(-3)
A 		1036
avr 20.5
(-3) 		1170.1
(3) 		1027.7
(2.3) 		22.9
(-3) 		1150

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 280
(-1.1)
P 		455
(3)
P 		400.4
(1.7)
P 		403.9
(1.8)
P 		288.6
(-0.9)
P 		197.1
(-3)
P 		258
B 284.6
(-1.1)
P 		534.9
(3)
P 		346.1
(-0.1)
P 		318.1
(-0.6)
P 		388
(0.6)
P 		171.4
(-3)
P 		364
C 262.7
(-1.8)
P 		405
(3)
P 		341.5
(0.9)
P 		354.1
(1.3)
P 		338.8
(0.8)
P 		226.6
(-3)
P 		178
avr 275.8
(-1.3) 		465
(3) 		362.7
(0.7) 		358.7
(0.6) 		338.5
(0.2) 		198.4
(-3) 		267
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 1.6
(-3)
A 		297.6
(3)
P 		270.9
(2.5)
P 		1.9
(-3)
A 		296
B 12.2
(-2.9)
A 		267.8
(3)
P 		255.7
(2.7)
P 		7.1
(-3)
A 		261
C 6.3
(-3)
A 		303.3
(2.5)
P 		328.9
(3)
P 		3.8
(-3)
A 		325
avr 6.7
(-2.9) 		289.6
(3) 		285.2
(2.9) 		4.3
(-3) 		285

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 51.6
(-2.8)
P 		161.8
(3)
P 		87.2
(-0.9)
P 		102.4
(-0.1)
P 		87.1
(-0.9)
P 		48
(-3)
P 		114
B 99
(-1.2)
P 		178
(3)
P 		84.1
(-1.9)
P 		84.2
(-1.9)
P 		157.7
(1.9)
P 		63.9
(-3)
P 		114
C 97.4
(0)
P 		123.6
(3)
P 		86.9
(-1.2)
P 		71.2
(-3)
P 		109.6
(1.4)
P 		75.9
(-2.5)
P 		52
avr 82.7
(-1.7) 		154.5
(3) 		86.1
(-1.5) 		85.9
(-1.5) 		118.1
(0.6) 		62.6
(-3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 182386_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8832
Sequence Type Exemplar sequence
Representative Public ID Y37A1B.7 NCBI
Target Description Y37A1B.7 /REP_DB=WormBase Gene ID /WP=CE19077 /TR=Q9XXG7 /GB=CAA19482.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070289 NCBI Caenorhabditis elegans Y37A1B.7 (Y37A1B.7) mRNA, complete cds. 11/11 None
SNAP00000004224 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14042679:14043689:-1 11/11 None
GENEFINDER00000004239 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14042679:14043749:-1 11/11 None
Y37A1B.7 ENSEMBL cdna:known chromosome:CEL140:IV:14042150:14043749:-1 gene:Y37A1B.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14042684-14043755(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37A1B.7
Entrez Gene 178359 Entrez gene
SwissProt Q9XXG7 EMBL-EBI
WormBase CE19077 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19482 Hypothetical protein Y37A1B.7 [Caenorhabditis elegans] ref|NP_502690.1| Y37A1B.7 [Caenorhabditis elegans] 1.0E-101
blast CAA19482 Hypothetical protein Y37A1B.7 [Caenorhabditis elegans] ref|NP_502690.1| Y37A1B.7 [Caenorhabditis elegans] 3.0E-88
blast CAE61980 Hypothetical protein CBG05985 [Caenorhabditis briggsae] 3.0E-81
blast CAE61980 Hypothetical protein CBG05985 [Caenorhabditis briggsae] 2.0E-80
Sequence
Target Sequence 
>C. ELEGANS:182386_S_AT
acaactcgcactttttattgcacttttcggtgcagtgaccgcgtggaatcgacaaaatca
tttcggaaatccatgctacctttgctcctgtttcactgtttacaccgatcgtgacgtggc
agtgccattgagaccgtacgctatggcaattgatggatatgatactacagaggatagatg
tctggccacgtgccaaagagatcagaggtgccgggcagctgtttatggaatggtcggtgg
cagaagtgtattcacctgtgaattctacgaaaaattcaacacaaaaagtgtgcctgtcta
cacaacatacgtgaatatgtacatgaaacgttcgagtgaatgcaaactgccaatcgcaca
tctctcatcgatcgagatgatcccagctgacaattcttctctgaaacgccgcgcaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACTCGCACTTTTTATTGCACTT 73 113 81 Antisense
GCACTTTTCGGTGCAGTGACCGCGT 168 315 100 Antisense
TCCTGTTTCACTGTTTACACCGATC 81 595 166 Antisense
TACACCGATCGTGACGTGGCAGTGC 362 641 181 Antisense
TGGCAGTGCCATTGAGACCGTACGC 400 537 197 Antisense
GATAGATGTCTGGCCACGTGCCAAA 509 425 253 Antisense
AAGAGATCAGAGGTGCCGGGCAGCT 208 155 276 Antisense
GCCGGGCAGCTGTTTATGGAATGGT 596 283 290 Antisense
GTGTGCCTGTCTACACAACATACGT 590 487 368 Antisense
ATCCCAGCTGACAATTCTTCTCTGA 146 39 460 Antisense
TCTTCTCTGAAACGCCGCGCAAAGC 477 615 475 Antisense
Sequence Source Affymetrix Proprietary Database